miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 63850 0.67 0.874958
Target:  5'- aAGCGcgUACCggcgaggUGGCCGGCUgGCCuuGCg -3'
miRNA:   3'- gUUGCa-GUGGa------ACUGGCUGAgUGG--CG- -5'
23209 3' -52.7 NC_005259.1 + 62617 0.66 0.896992
Target:  5'- uGACGccgCACCgUGGCCag--CACCGCa -3'
miRNA:   3'- gUUGCa--GUGGaACUGGcugaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 62125 0.67 0.842152
Target:  5'- ---aGUCACCgaggUGAUCGuCUCgaccaccucagGCCGCa -3'
miRNA:   3'- guugCAGUGGa---ACUGGCuGAG-----------UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 60183 0.66 0.882558
Target:  5'- gAACGcCugCUcGACCGACcgggccacgaucUCGCCGa -3'
miRNA:   3'- gUUGCaGugGAaCUGGCUG------------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 58948 0.67 0.8507
Target:  5'- gCAGCGUCgGCCUUGGCCaGcaggucgggcaGCUCGuCgGCg -3'
miRNA:   3'- -GUUGCAG-UGGAACUGG-C-----------UGAGU-GgCG- -5'
23209 3' -52.7 NC_005259.1 + 58181 0.66 0.916663
Target:  5'- uCGACG-CACguCUUGACCGccguggGCUUGCCGg -3'
miRNA:   3'- -GUUGCaGUG--GAACUGGC------UGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 57499 1.12 0.001613
Target:  5'- uCAACGUCACCUUGACCGACUCACCGCa -3'
miRNA:   3'- -GUUGCAGUGGAACUGGCUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 57419 0.66 0.903817
Target:  5'- ---aGUCugCUgcuACCGGCUCGCuuaCGCg -3'
miRNA:   3'- guugCAGugGAac-UGGCUGAGUG---GCG- -5'
23209 3' -52.7 NC_005259.1 + 56230 0.66 0.911015
Target:  5'- cCAGuCGUCGCCgccgaccacguuggGAUCGGCggccuugagCGCCGCc -3'
miRNA:   3'- -GUU-GCAGUGGaa------------CUGGCUGa--------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 53737 0.68 0.833386
Target:  5'- uGAUGUCGCCgggUGuCC-ACUCgguGCCGCc -3'
miRNA:   3'- gUUGCAGUGGa--ACuGGcUGAG---UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 53218 0.67 0.859022
Target:  5'- -cGCGUCGCCcgcgcccugcUUGagguucgcgccGCCGACaccgUCGCCGCc -3'
miRNA:   3'- guUGCAGUGG----------AAC-----------UGGCUG----AGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 52568 0.67 0.841285
Target:  5'- aCAugGUCgACCg-GACCGGCcugagcgUCGCCGa -3'
miRNA:   3'- -GUugCAG-UGGaaCUGGCUG-------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 50409 0.7 0.71481
Target:  5'- gAGCGcgccggUGCCUUGACCGGCUCggGCaGCg -3'
miRNA:   3'- gUUGCa-----GUGGAACUGGCUGAG--UGgCG- -5'
23209 3' -52.7 NC_005259.1 + 48497 0.72 0.584522
Target:  5'- uCGACG-CGCUUgagGGCCgcGACUUGCCGCa -3'
miRNA:   3'- -GUUGCaGUGGAa--CUGG--CUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 48401 0.66 0.903817
Target:  5'- cCGACGccCGCCg---UCGAgUCACCGCg -3'
miRNA:   3'- -GUUGCa-GUGGaacuGGCUgAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47895 0.66 0.896992
Target:  5'- uCAGCGUCggcucguugagcGCCUUGAU-GGCgUCGCCGa -3'
miRNA:   3'- -GUUGCAG------------UGGAACUGgCUG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 47486 0.66 0.896992
Target:  5'- -cGCGUCACCgaGGCgCGGCaggaacaCGCUGCc -3'
miRNA:   3'- guUGCAGUGGaaCUG-GCUGa------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47275 0.66 0.889904
Target:  5'- cCAGCG-CACCgagcaGACCGcCgUCGCCGg -3'
miRNA:   3'- -GUUGCaGUGGaa---CUGGCuG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 45335 0.66 0.896992
Target:  5'- -uGCGUgGCCUgcGCCGcCUgggcCGCCGCg -3'
miRNA:   3'- guUGCAgUGGAacUGGCuGA----GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 44616 0.74 0.493518
Target:  5'- uUAGCGUugccgccguagguugCGCCUUGACCGguGC-CGCCGCc -3'
miRNA:   3'- -GUUGCA---------------GUGGAACUGGC--UGaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.