Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23210 | 5' | -54.2 | NC_005259.1 | + | 17351 | 0.66 | 0.851857 |
Target: 5'- cGCCGUCgaggucggcggCUcgGCGCUGGUCGUggUCGa -3' miRNA: 3'- -CGGUAG-----------GAa-CGCGACUAGCAggAGCg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 56375 | 0.66 | 0.85102 |
Target: 5'- aGCCGUCgCggGCcgcgucgGCUGAUCGU-CUCGa -3' miRNA: 3'- -CGGUAG-GaaCG-------CGACUAGCAgGAGCg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 48249 | 0.66 | 0.846799 |
Target: 5'- gGUCGUUCUUgGUGCUGuaGUCGUacuuacgguugucgaCCUUGCg -3' miRNA: 3'- -CGGUAGGAA-CGCGAC--UAGCA---------------GGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 53007 | 0.66 | 0.846799 |
Target: 5'- uGCCucgaCUggGCGCUGcgguggcgucgaggcAUCGUgaCCUCGCg -3' miRNA: 3'- -CGGua--GGaaCGCGAC---------------UAGCA--GGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 10976 | 0.66 | 0.834691 |
Target: 5'- uGUgGUCa-UGUGaacGAUUGUCCUCGCa -3' miRNA: 3'- -CGgUAGgaACGCga-CUAGCAGGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 286 | 0.66 | 0.832043 |
Target: 5'- cGCCuacgcggCCUcGCGCUGAUcucgaccgggggugCGUCCggccaaCGCa -3' miRNA: 3'- -CGGua-----GGAaCGCGACUA--------------GCAGGa-----GCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 46466 | 0.66 | 0.832043 |
Target: 5'- gGCUcagAUCCUUgaGCGCuguggccacgcccuUGAUCGugUCCUCGUc -3' miRNA: 3'- -CGG---UAGGAA--CGCG--------------ACUAGC--AGGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 35907 | 0.66 | 0.825792 |
Target: 5'- aGCCAUUCUgcguUGCGCgGGaCGUCCaCGa -3' miRNA: 3'- -CGGUAGGA----ACGCGaCUaGCAGGaGCg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 59392 | 0.66 | 0.816694 |
Target: 5'- uGCC-UCCgcGCGC-GAgCGUgaCCUCGCg -3' miRNA: 3'- -CGGuAGGaaCGCGaCUaGCA--GGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 38292 | 0.67 | 0.797939 |
Target: 5'- uGUCAUCg--GCGCUGAUCGUCg---- -3' miRNA: 3'- -CGGUAGgaaCGCGACUAGCAGgagcg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 44917 | 0.67 | 0.768566 |
Target: 5'- gGCCG-CCgcauacGCGCUGAUCGggUCCaUgGCa -3' miRNA: 3'- -CGGUaGGaa----CGCGACUAGC--AGG-AgCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 36677 | 0.67 | 0.768566 |
Target: 5'- cGCCG-CCgggGUcUUGAcCGUCCUCGCc -3' miRNA: 3'- -CGGUaGGaa-CGcGACUaGCAGGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 27317 | 0.68 | 0.706413 |
Target: 5'- -gCAUCgUUGCGCgGGUUG-CCUCGg -3' miRNA: 3'- cgGUAGgAACGCGaCUAGCaGGAGCg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 41957 | 0.69 | 0.695742 |
Target: 5'- uGCCGUCCgcucGCGUUGAcUUGUCCg-GUg -3' miRNA: 3'- -CGGUAGGaa--CGCGACU-AGCAGGagCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 58429 | 0.69 | 0.695742 |
Target: 5'- aCCGggCagaUUGCGCUGAUCGguggCCUUGg -3' miRNA: 3'- cGGUa-Gg--AACGCGACUAGCa---GGAGCg -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 6446 | 0.69 | 0.695742 |
Target: 5'- aCCGUC---GCGCUGAUCGgcagCgUCGCc -3' miRNA: 3'- cGGUAGgaaCGCGACUAGCa---GgAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 57154 | 0.7 | 0.619946 |
Target: 5'- gGCCcUCCcacGUGCcGAacgCGUCCUCGCc -3' miRNA: 3'- -CGGuAGGaa-CGCGaCUa--GCAGGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 9714 | 0.7 | 0.587423 |
Target: 5'- aCCGUCCUcGgGCcGGUCGagCUCGCc -3' miRNA: 3'- cGGUAGGAaCgCGaCUAGCagGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 62962 | 0.71 | 0.576643 |
Target: 5'- cGCUGUCCUcGuCGuCUuccUCGUCCUCGCg -3' miRNA: 3'- -CGGUAGGAaC-GC-GAcu-AGCAGGAGCG- -5' |
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23210 | 5' | -54.2 | NC_005259.1 | + | 50680 | 0.72 | 0.472466 |
Target: 5'- cGUCGgugCCgacgagGCGCUGcUCGUCgUCGCg -3' miRNA: 3'- -CGGUa--GGaa----CGCGACuAGCAGgAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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