miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23210 5' -54.2 NC_005259.1 + 17351 0.66 0.851857
Target:  5'- cGCCGUCgaggucggcggCUcgGCGCUGGUCGUggUCGa -3'
miRNA:   3'- -CGGUAG-----------GAa-CGCGACUAGCAggAGCg -5'
23210 5' -54.2 NC_005259.1 + 56375 0.66 0.85102
Target:  5'- aGCCGUCgCggGCcgcgucgGCUGAUCGU-CUCGa -3'
miRNA:   3'- -CGGUAG-GaaCG-------CGACUAGCAgGAGCg -5'
23210 5' -54.2 NC_005259.1 + 53007 0.66 0.846799
Target:  5'- uGCCucgaCUggGCGCUGcgguggcgucgaggcAUCGUgaCCUCGCg -3'
miRNA:   3'- -CGGua--GGaaCGCGAC---------------UAGCA--GGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 48249 0.66 0.846799
Target:  5'- gGUCGUUCUUgGUGCUGuaGUCGUacuuacgguugucgaCCUUGCg -3'
miRNA:   3'- -CGGUAGGAA-CGCGAC--UAGCA---------------GGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 10976 0.66 0.834691
Target:  5'- uGUgGUCa-UGUGaacGAUUGUCCUCGCa -3'
miRNA:   3'- -CGgUAGgaACGCga-CUAGCAGGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 286 0.66 0.832043
Target:  5'- cGCCuacgcggCCUcGCGCUGAUcucgaccgggggugCGUCCggccaaCGCa -3'
miRNA:   3'- -CGGua-----GGAaCGCGACUA--------------GCAGGa-----GCG- -5'
23210 5' -54.2 NC_005259.1 + 46466 0.66 0.832043
Target:  5'- gGCUcagAUCCUUgaGCGCuguggccacgcccuUGAUCGugUCCUCGUc -3'
miRNA:   3'- -CGG---UAGGAA--CGCG--------------ACUAGC--AGGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 35907 0.66 0.825792
Target:  5'- aGCCAUUCUgcguUGCGCgGGaCGUCCaCGa -3'
miRNA:   3'- -CGGUAGGA----ACGCGaCUaGCAGGaGCg -5'
23210 5' -54.2 NC_005259.1 + 59392 0.66 0.816694
Target:  5'- uGCC-UCCgcGCGC-GAgCGUgaCCUCGCg -3'
miRNA:   3'- -CGGuAGGaaCGCGaCUaGCA--GGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 38292 0.67 0.797939
Target:  5'- uGUCAUCg--GCGCUGAUCGUCg---- -3'
miRNA:   3'- -CGGUAGgaaCGCGACUAGCAGgagcg -5'
23210 5' -54.2 NC_005259.1 + 36677 0.67 0.768566
Target:  5'- cGCCG-CCgggGUcUUGAcCGUCCUCGCc -3'
miRNA:   3'- -CGGUaGGaa-CGcGACUaGCAGGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 44917 0.67 0.768566
Target:  5'- gGCCG-CCgcauacGCGCUGAUCGggUCCaUgGCa -3'
miRNA:   3'- -CGGUaGGaa----CGCGACUAGC--AGG-AgCG- -5'
23210 5' -54.2 NC_005259.1 + 27317 0.68 0.706413
Target:  5'- -gCAUCgUUGCGCgGGUUG-CCUCGg -3'
miRNA:   3'- cgGUAGgAACGCGaCUAGCaGGAGCg -5'
23210 5' -54.2 NC_005259.1 + 58429 0.69 0.695742
Target:  5'- aCCGggCagaUUGCGCUGAUCGguggCCUUGg -3'
miRNA:   3'- cGGUa-Gg--AACGCGACUAGCa---GGAGCg -5'
23210 5' -54.2 NC_005259.1 + 41957 0.69 0.695742
Target:  5'- uGCCGUCCgcucGCGUUGAcUUGUCCg-GUg -3'
miRNA:   3'- -CGGUAGGaa--CGCGACU-AGCAGGagCG- -5'
23210 5' -54.2 NC_005259.1 + 6446 0.69 0.695742
Target:  5'- aCCGUC---GCGCUGAUCGgcagCgUCGCc -3'
miRNA:   3'- cGGUAGgaaCGCGACUAGCa---GgAGCG- -5'
23210 5' -54.2 NC_005259.1 + 57154 0.7 0.619946
Target:  5'- gGCCcUCCcacGUGCcGAacgCGUCCUCGCc -3'
miRNA:   3'- -CGGuAGGaa-CGCGaCUa--GCAGGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 9714 0.7 0.587423
Target:  5'- aCCGUCCUcGgGCcGGUCGagCUCGCc -3'
miRNA:   3'- cGGUAGGAaCgCGaCUAGCagGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 62962 0.71 0.576643
Target:  5'- cGCUGUCCUcGuCGuCUuccUCGUCCUCGCg -3'
miRNA:   3'- -CGGUAGGAaC-GC-GAcu-AGCAGGAGCG- -5'
23210 5' -54.2 NC_005259.1 + 50680 0.72 0.472466
Target:  5'- cGUCGgugCCgacgagGCGCUGcUCGUCgUCGCg -3'
miRNA:   3'- -CGGUa--GGaa----CGCGACuAGCAGgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.