miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 37371 0.7 0.468434
Target:  5'- uAGCucACGCCCUCGGcaccGCCcGCCGCg -3'
miRNA:   3'- -UCG--UGUGGGAGCUacauCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 8539 0.7 0.449054
Target:  5'- cGGCGaugaGCUCggCGGUGUAGCCcaugcGCCGCa -3'
miRNA:   3'- -UCGUg---UGGGa-GCUACAUCGGc----UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 15571 0.7 0.449054
Target:  5'- uGGC-CACCCUCGG---GGCCagcgcgacgGGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCUacaUCGG---------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4608 0.7 0.446185
Target:  5'- aGGCACGCUgUCGGgccgGUGGCgCGAguucuggauagugcCCGCg -3'
miRNA:   3'- -UCGUGUGGgAGCUa---CAUCG-GCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 36434 0.71 0.439531
Target:  5'- uGCGCAgCgUCGccGaGGUCGACCGCg -3'
miRNA:   3'- uCGUGUgGgAGCuaCaUCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 35528 0.71 0.439531
Target:  5'- gGGCACACCgCcCGccGUcGCCGAuCCGCc -3'
miRNA:   3'- -UCGUGUGG-GaGCuaCAuCGGCU-GGCG- -5'
23211 3' -56.5 NC_005259.1 + 44735 0.71 0.424537
Target:  5'- cAGCGCGCCCUCGAccgcgccgaggcucuUG-AGCacCGAucCCGCa -3'
miRNA:   3'- -UCGUGUGGGAGCU---------------ACaUCG--GCU--GGCG- -5'
23211 3' -56.5 NC_005259.1 + 16491 0.71 0.411672
Target:  5'- gGGCGCACCCgcgCGca-UGGCCGAgaGCg -3'
miRNA:   3'- -UCGUGUGGGa--GCuacAUCGGCUggCG- -5'
23211 3' -56.5 NC_005259.1 + 40805 0.71 0.411672
Target:  5'- uAGCGguCACCCUCGG---GGUCGACgCGCa -3'
miRNA:   3'- -UCGU--GUGGGAGCUacaUCGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 30664 0.71 0.411672
Target:  5'- cAGCACaucGCCCggCGA-GUAGCUGGCCa- -3'
miRNA:   3'- -UCGUG---UGGGa-GCUaCAUCGGCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 66012 0.71 0.402631
Target:  5'- uGCGCACCCUCGG---GGCCGcacguguuGCgCGCg -3'
miRNA:   3'- uCGUGUGGGAGCUacaUCGGC--------UG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 41062 0.72 0.384933
Target:  5'- gAGUGCGCCCacggcUCGAUGUcacgcAGCCGGUCGUa -3'
miRNA:   3'- -UCGUGUGGG-----AGCUACA-----UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42197 0.72 0.384933
Target:  5'- uGCGCGCCgucgCGAUGgauGCCcGCCGCg -3'
miRNA:   3'- uCGUGUGGga--GCUACau-CGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41489 0.72 0.376279
Target:  5'- gAGCACGaCCUCGGcgGUGGCgggcaGACCGUg -3'
miRNA:   3'- -UCGUGUgGGAGCUa-CAUCGg----CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41402 0.72 0.366913
Target:  5'- uGGCGCGCCgCUCGggGU-GCCcacgaugugcacgGGCCGCc -3'
miRNA:   3'- -UCGUGUGG-GAGCuaCAuCGG-------------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42930 0.72 0.351116
Target:  5'- gAGCAUgagGCCCUCGccGUGGgCGagGCCGCc -3'
miRNA:   3'- -UCGUG---UGGGAGCuaCAUCgGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 21493 0.73 0.342998
Target:  5'- uGCAcCGCCCUCGGUGgAGCa-ACUGCa -3'
miRNA:   3'- uCGU-GUGGGAGCUACaUCGgcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 23950 0.73 0.342998
Target:  5'- uGCGCACCC-CGAgacgGGCCGAuugaccucguacCCGCg -3'
miRNA:   3'- uCGUGUGGGaGCUaca-UCGGCU------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 12167 0.73 0.311891
Target:  5'- cGGCAcCGCCCUCGGUcgaaccuGCCGgACCGUg -3'
miRNA:   3'- -UCGU-GUGGGAGCUAcau----CGGC-UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42640 0.74 0.282973
Target:  5'- aGGCACcucgGCCC-CGAUGUGGgCGGCCacGCg -3'
miRNA:   3'- -UCGUG----UGGGaGCUACAUCgGCUGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.