miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 36103 0.68 0.581463
Target:  5'- cAGCACGCCCUuuuUGGUGagcguaAGCaguugGGCCGCc -3'
miRNA:   3'- -UCGUGUGGGA---GCUACa-----UCGg----CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 28166 0.68 0.581463
Target:  5'- cGCGCuGCCCUUGAcGUAGuCCGGUgGCg -3'
miRNA:   3'- uCGUG-UGGGAGCUaCAUC-GGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 22505 0.68 0.570851
Target:  5'- --aACGCCCUCGAUGa---CGugCGCa -3'
miRNA:   3'- ucgUGUGGGAGCUACaucgGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 60081 0.68 0.570851
Target:  5'- cGGCuCGCCgacuuuCUCGAUGgcgAGCuCGACCaGCg -3'
miRNA:   3'- -UCGuGUGG------GAGCUACa--UCG-GCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 31751 0.69 0.559233
Target:  5'- gAGCGCugguguccccaccGCCCcgucaUCGAUGUGcugcGCCuuGACCGCg -3'
miRNA:   3'- -UCGUG-------------UGGG-----AGCUACAU----CGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 38851 0.69 0.549777
Target:  5'- uAGCGCGuuCUCGAUGU--UCGACgCGCc -3'
miRNA:   3'- -UCGUGUggGAGCUACAucGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 4293 0.69 0.549777
Target:  5'- gAGCACggaccggcgGCCCUgCGAUG-AGCgCGACCa- -3'
miRNA:   3'- -UCGUG---------UGGGA-GCUACaUCG-GCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 22177 0.69 0.543501
Target:  5'- cAGCGCGCCCaUCGugguUGcgaccuugcagacguUGGCC-ACCGCg -3'
miRNA:   3'- -UCGUGUGGG-AGCu---AC---------------AUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4427 0.69 0.53933
Target:  5'- cGCGCGCCCgaGGUcgAGCCGcCCGUg -3'
miRNA:   3'- uCGUGUGGGagCUAcaUCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 6969 0.69 0.52895
Target:  5'- -cCACACCCUCGAUGaccuaacGCCGAgauugaCGCc -3'
miRNA:   3'- ucGUGUGGGAGCUACau-----CGGCUg-----GCG- -5'
23211 3' -56.5 NC_005259.1 + 11515 0.69 0.52895
Target:  5'- aGGC-CAUCCUCGGcggcagcgaucuUG-AGCCGuuGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCU------------ACaUCGGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 38473 0.69 0.52895
Target:  5'- gGGCAgaacaauuUGCaCCUCGAaaagaucggucUGUAGCgGGCCGCc -3'
miRNA:   3'- -UCGU--------GUG-GGAGCU-----------ACAUCGgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 20694 0.69 0.527916
Target:  5'- cGGCACGCgCUCG--GUGGUCGaagguuucaccccGCCGCg -3'
miRNA:   3'- -UCGUGUGgGAGCuaCAUCGGC-------------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 783 0.69 0.518645
Target:  5'- aGGCGgcUGCCCUCGGUuggGUGGCCaaggGGCCGg -3'
miRNA:   3'- -UCGU--GUGGGAGCUA---CAUCGG----CUGGCg -5'
23211 3' -56.5 NC_005259.1 + 67970 0.69 0.508421
Target:  5'- uAGCGCGCgCagCGgcGUGGCC-ACCGCc -3'
miRNA:   3'- -UCGUGUGgGa-GCuaCAUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 63850 0.69 0.508421
Target:  5'- aAGCGCguACCggCGAgGUGGCCGGCUGg -3'
miRNA:   3'- -UCGUG--UGGgaGCUaCAUCGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 4119 0.7 0.498282
Target:  5'- --gGCGgCCUCGAcGUGGCCaaGACCGUc -3'
miRNA:   3'- ucgUGUgGGAGCUaCAUCGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 44168 0.7 0.498282
Target:  5'- cAGCGCGCC---GGUGUcggagaaaAGUCGACCGCu -3'
miRNA:   3'- -UCGUGUGGgagCUACA--------UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 30963 0.7 0.475318
Target:  5'- gAGCACACCgaUGGUGUAGCaGAuucccucguuguccCCGCc -3'
miRNA:   3'- -UCGUGUGGgaGCUACAUCGgCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 58647 0.7 0.468434
Target:  5'- -cCAUGCCCUCGcgGUAGCCcGgUGCa -3'
miRNA:   3'- ucGUGUGGGAGCuaCAUCGGcUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.