miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 22177 0.69 0.543501
Target:  5'- cAGCGCGCCCaUCGugguUGcgaccuugcagacguUGGCC-ACCGCg -3'
miRNA:   3'- -UCGUGUGGG-AGCu---AC---------------AUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4293 0.69 0.549777
Target:  5'- gAGCACggaccggcgGCCCUgCGAUG-AGCgCGACCa- -3'
miRNA:   3'- -UCGUG---------UGGGA-GCUACaUCG-GCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 38851 0.69 0.549777
Target:  5'- uAGCGCGuuCUCGAUGU--UCGACgCGCc -3'
miRNA:   3'- -UCGUGUggGAGCUACAucGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 31751 0.69 0.559233
Target:  5'- gAGCGCugguguccccaccGCCCcgucaUCGAUGUGcugcGCCuuGACCGCg -3'
miRNA:   3'- -UCGUG-------------UGGG-----AGCUACAU----CGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 22505 0.68 0.570851
Target:  5'- --aACGCCCUCGAUGa---CGugCGCa -3'
miRNA:   3'- ucgUGUGGGAGCUACaucgGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 60081 0.68 0.570851
Target:  5'- cGGCuCGCCgacuuuCUCGAUGgcgAGCuCGACCaGCg -3'
miRNA:   3'- -UCGuGUGG------GAGCUACa--UCG-GCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 68063 0.68 0.581463
Target:  5'- gAGCACGCgCUcaaUCGAUGU-GCUGAUCaGCu -3'
miRNA:   3'- -UCGUGUG-GG---AGCUACAuCGGCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 36103 0.68 0.581463
Target:  5'- cAGCACGCCCUuuuUGGUGagcguaAGCaguugGGCCGCc -3'
miRNA:   3'- -UCGUGUGGGA---GCUACa-----UCGg----CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 28166 0.68 0.581463
Target:  5'- cGCGCuGCCCUUGAcGUAGuCCGGUgGCg -3'
miRNA:   3'- uCGUG-UGGGAGCUaCAUC-GGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 2139 0.68 0.581463
Target:  5'- cGCAgACCCgcaCGGUGcUGGCCaGCgGCg -3'
miRNA:   3'- uCGUgUGGGa--GCUAC-AUCGGcUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 26888 0.68 0.592115
Target:  5'- gAGCACACCaUCGGUGUucaucacggGGCCGGguuucUUGCc -3'
miRNA:   3'- -UCGUGUGGgAGCUACA---------UCGGCU-----GGCG- -5'
23211 3' -56.5 NC_005259.1 + 56161 0.68 0.613507
Target:  5'- gAGCACGUCCUCGuUGgccacgguGCCGACauaCGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuACau------CGGCUG---GCG- -5'
23211 3' -56.5 NC_005259.1 + 27462 0.67 0.62423
Target:  5'- cGCGCgggaaauugggGCCggggUCGGUGUGGCC-ACCGCc -3'
miRNA:   3'- uCGUG-----------UGGg---AGCUACAUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 13536 0.67 0.62423
Target:  5'- cGGC-CACCaagcaguucgCGAUGUGGCCcGCCGa -3'
miRNA:   3'- -UCGuGUGGga--------GCUACAUCGGcUGGCg -5'
23211 3' -56.5 NC_005259.1 + 6501 0.67 0.62423
Target:  5'- uGCugGCCCacaUCGAccgacGCCGugCGCg -3'
miRNA:   3'- uCGugUGGG---AGCUacau-CGGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 64449 0.67 0.62423
Target:  5'- gGGCGCuGCCCUUGggGcGGCgaaCGACgCGCa -3'
miRNA:   3'- -UCGUG-UGGGAGCuaCaUCG---GCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 64152 0.67 0.62423
Target:  5'- cGGCgAUGCCCUUGAcGUAGUcggCGACUGUc -3'
miRNA:   3'- -UCG-UGUGGGAGCUaCAUCG---GCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 7948 0.67 0.63496
Target:  5'- uGCGCGCCCaCGGcugcuugGUGGCCcacgcccACCGCa -3'
miRNA:   3'- uCGUGUGGGaGCUa------CAUCGGc------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 19848 0.67 0.63496
Target:  5'- uGC-CGCgCUCGGUGUGGCgcucgCGcCCGCc -3'
miRNA:   3'- uCGuGUGgGAGCUACAUCG-----GCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 34553 0.67 0.63496
Target:  5'- cAGCuuGCCgUCGG---GGCCGACgGCg -3'
miRNA:   3'- -UCGugUGGgAGCUacaUCGGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.