miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 40805 0.71 0.411672
Target:  5'- uAGCGguCACCCUCGG---GGUCGACgCGCa -3'
miRNA:   3'- -UCGU--GUGGGAGCUacaUCGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 44735 0.71 0.424537
Target:  5'- cAGCGCGCCCUCGAccgcgccgaggcucuUG-AGCacCGAucCCGCa -3'
miRNA:   3'- -UCGUGUGGGAGCU---------------ACaUCG--GCU--GGCG- -5'
23211 3' -56.5 NC_005259.1 + 36434 0.71 0.439531
Target:  5'- uGCGCAgCgUCGccGaGGUCGACCGCg -3'
miRNA:   3'- uCGUGUgGgAGCuaCaUCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 35528 0.71 0.439531
Target:  5'- gGGCACACCgCcCGccGUcGCCGAuCCGCc -3'
miRNA:   3'- -UCGUGUGG-GaGCuaCAuCGGCU-GGCG- -5'
23211 3' -56.5 NC_005259.1 + 4608 0.7 0.446185
Target:  5'- aGGCACGCUgUCGGgccgGUGGCgCGAguucuggauagugcCCGCg -3'
miRNA:   3'- -UCGUGUGGgAGCUa---CAUCG-GCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 8539 0.7 0.449054
Target:  5'- cGGCGaugaGCUCggCGGUGUAGCCcaugcGCCGCa -3'
miRNA:   3'- -UCGUg---UGGGa-GCUACAUCGGc----UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 15571 0.7 0.449054
Target:  5'- uGGC-CACCCUCGG---GGCCagcgcgacgGGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCUacaUCGG---------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 37371 0.7 0.468434
Target:  5'- uAGCucACGCCCUCGGcaccGCCcGCCGCg -3'
miRNA:   3'- -UCG--UGUGGGAGCUacauCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 58647 0.7 0.468434
Target:  5'- -cCAUGCCCUCGcgGUAGCCcGgUGCa -3'
miRNA:   3'- ucGUGUGGGAGCuaCAUCGGcUgGCG- -5'
23211 3' -56.5 NC_005259.1 + 30963 0.7 0.475318
Target:  5'- gAGCACACCgaUGGUGUAGCaGAuucccucguuguccCCGCc -3'
miRNA:   3'- -UCGUGUGGgaGCUACAUCGgCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 4119 0.7 0.498282
Target:  5'- --gGCGgCCUCGAcGUGGCCaaGACCGUc -3'
miRNA:   3'- ucgUGUgGGAGCUaCAUCGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 44168 0.7 0.498282
Target:  5'- cAGCGCGCC---GGUGUcggagaaaAGUCGACCGCu -3'
miRNA:   3'- -UCGUGUGGgagCUACA--------UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 63850 0.69 0.508421
Target:  5'- aAGCGCguACCggCGAgGUGGCCGGCUGg -3'
miRNA:   3'- -UCGUG--UGGgaGCUaCAUCGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 67970 0.69 0.508421
Target:  5'- uAGCGCGCgCagCGgcGUGGCC-ACCGCc -3'
miRNA:   3'- -UCGUGUGgGa-GCuaCAUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 783 0.69 0.518645
Target:  5'- aGGCGgcUGCCCUCGGUuggGUGGCCaaggGGCCGg -3'
miRNA:   3'- -UCGU--GUGGGAGCUA---CAUCGG----CUGGCg -5'
23211 3' -56.5 NC_005259.1 + 20694 0.69 0.527916
Target:  5'- cGGCACGCgCUCG--GUGGUCGaagguuucaccccGCCGCg -3'
miRNA:   3'- -UCGUGUGgGAGCuaCAUCGGC-------------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 11515 0.69 0.52895
Target:  5'- aGGC-CAUCCUCGGcggcagcgaucuUG-AGCCGuuGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCU------------ACaUCGGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 38473 0.69 0.52895
Target:  5'- gGGCAgaacaauuUGCaCCUCGAaaagaucggucUGUAGCgGGCCGCc -3'
miRNA:   3'- -UCGU--------GUG-GGAGCU-----------ACAUCGgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 6969 0.69 0.52895
Target:  5'- -cCACACCCUCGAUGaccuaacGCCGAgauugaCGCc -3'
miRNA:   3'- ucGUGUGGGAGCUACau-----CGGCUg-----GCG- -5'
23211 3' -56.5 NC_005259.1 + 4427 0.69 0.53933
Target:  5'- cGCGCGCCCgaGGUcgAGCCGcCCGUg -3'
miRNA:   3'- uCGUGUGGGagCUAcaUCGGCuGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.