miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 15571 0.7 0.449054
Target:  5'- uGGC-CACCCUCGG---GGCCagcgcgacgGGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCUacaUCGG---------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 16491 0.71 0.411672
Target:  5'- gGGCGCACCCgcgCGca-UGGCCGAgaGCg -3'
miRNA:   3'- -UCGUGUGGGa--GCuacAUCGGCUggCG- -5'
23211 3' -56.5 NC_005259.1 + 19848 0.67 0.63496
Target:  5'- uGC-CGCgCUCGGUGUGGCgcucgCGcCCGCc -3'
miRNA:   3'- uCGuGUGgGAGCUACAUCG-----GCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 20694 0.69 0.527916
Target:  5'- cGGCACGCgCUCG--GUGGUCGaagguuucaccccGCCGCg -3'
miRNA:   3'- -UCGUGUGgGAGCuaCAUCGGC-------------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 21493 0.73 0.342998
Target:  5'- uGCAcCGCCCUCGGUGgAGCa-ACUGCa -3'
miRNA:   3'- uCGU-GUGGGAGCUACaUCGgcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 22177 0.69 0.543501
Target:  5'- cAGCGCGCCCaUCGugguUGcgaccuugcagacguUGGCC-ACCGCg -3'
miRNA:   3'- -UCGUGUGGG-AGCu---AC---------------AUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 22505 0.68 0.570851
Target:  5'- --aACGCCCUCGAUGa---CGugCGCa -3'
miRNA:   3'- ucgUGUGGGAGCUACaucgGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 23152 0.66 0.698953
Target:  5'- uGCGagacCACCCUCGGUGUc-CCGuucaucCCGCu -3'
miRNA:   3'- uCGU----GUGGGAGCUACAucGGCu-----GGCG- -5'
23211 3' -56.5 NC_005259.1 + 23950 0.73 0.342998
Target:  5'- uGCGCACCC-CGAgacgGGCCGAuugaccucguacCCGCg -3'
miRNA:   3'- uCGUGUGGGaGCUaca-UCGGCU------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 26343 0.78 0.156391
Target:  5'- uAGCACGCCCUCG----GGCCGAgCUGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuacaUCGGCU-GGCG- -5'
23211 3' -56.5 NC_005259.1 + 26709 0.66 0.719899
Target:  5'- gGGUugAuuUCCUCGAccaucgGGCCGACCuGCu -3'
miRNA:   3'- -UCGugU--GGGAGCUaca---UCGGCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 26888 0.68 0.592115
Target:  5'- gAGCACACCaUCGGUGUucaucacggGGCCGGguuucUUGCc -3'
miRNA:   3'- -UCGUGUGGgAGCUACA---------UCGGCU-----GGCG- -5'
23211 3' -56.5 NC_005259.1 + 27462 0.67 0.62423
Target:  5'- cGCGCgggaaauugggGCCggggUCGGUGUGGCC-ACCGCc -3'
miRNA:   3'- uCGUG-----------UGGg---AGCUACAUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 28166 0.68 0.581463
Target:  5'- cGCGCuGCCCUUGAcGUAGuCCGGUgGCg -3'
miRNA:   3'- uCGUG-UGGGAGCUaCAUC-GGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 30193 0.67 0.645687
Target:  5'- cAGCACuACCC-CGucgGU-GCCcGCCGCg -3'
miRNA:   3'- -UCGUG-UGGGaGCua-CAuCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 30664 0.71 0.411672
Target:  5'- cAGCACaucGCCCggCGA-GUAGCUGGCCa- -3'
miRNA:   3'- -UCGUG---UGGGa-GCUaCAUCGGCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 30963 0.7 0.475318
Target:  5'- gAGCACACCgaUGGUGUAGCaGAuucccucguuguccCCGCc -3'
miRNA:   3'- -UCGUGUGGgaGCUACAUCGgCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 31751 0.69 0.559233
Target:  5'- gAGCGCugguguccccaccGCCCcgucaUCGAUGUGcugcGCCuuGACCGCg -3'
miRNA:   3'- -UCGUG-------------UGGG-----AGCUACAU----CGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 34430 0.77 0.193268
Target:  5'- gAGaCGC-CCCUCGAUGagcuGCCGACCGg -3'
miRNA:   3'- -UC-GUGuGGGAGCUACau--CGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 34553 0.67 0.63496
Target:  5'- cAGCuuGCCgUCGG---GGCCGACgGCg -3'
miRNA:   3'- -UCGugUGGgAGCUacaUCGGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.