miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 46999 0.67 0.645687
Target:  5'- gGGUGCGCCacgCGAgGaAGCCGACCa- -3'
miRNA:   3'- -UCGUGUGGga-GCUaCaUCGGCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 46934 0.67 0.63496
Target:  5'- gAGCuuGCCCgccgCGcc---GCCGACCGCg -3'
miRNA:   3'- -UCGugUGGGa---GCuacauCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 46731 0.66 0.740514
Target:  5'- gAGCACguaggugauGCCCgCGAUGgcugcGCCGACaccuGCg -3'
miRNA:   3'- -UCGUG---------UGGGaGCUACau---CGGCUGg---CG- -5'
23211 3' -56.5 NC_005259.1 + 46426 0.66 0.709463
Target:  5'- uGUGCACCCgugaCGAUgGUGGCaaGCUGCu -3'
miRNA:   3'- uCGUGUGGGa---GCUA-CAUCGgcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 46340 0.66 0.697899
Target:  5'- cGCGCACCgCUUGuagGUucugGGCCGcgauggcACCGCc -3'
miRNA:   3'- uCGUGUGG-GAGCua-CA----UCGGC-------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 45766 0.78 0.164966
Target:  5'- gAGCACGCCCUCGccGgguGCCaGcACCGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuaCau-CGG-C-UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 44735 0.71 0.424537
Target:  5'- cAGCGCGCCCUCGAccgcgccgaggcucuUG-AGCacCGAucCCGCa -3'
miRNA:   3'- -UCGUGUGGGAGCU---------------ACaUCG--GCU--GGCG- -5'
23211 3' -56.5 NC_005259.1 + 44168 0.7 0.498282
Target:  5'- cAGCGCGCC---GGUGUcggagaaaAGUCGACCGCu -3'
miRNA:   3'- -UCGUGUGGgagCUACA--------UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 43860 0.66 0.688383
Target:  5'- gAGCGCACCCgugaCGAcaccggcagcguUGccGCCGAcauugcCCGCg -3'
miRNA:   3'- -UCGUGUGGGa---GCU------------ACauCGGCU------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 42930 0.72 0.351116
Target:  5'- gAGCAUgagGCCCUCGccGUGGgCGagGCCGCc -3'
miRNA:   3'- -UCGUG---UGGGAGCuaCAUCgGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42640 0.74 0.282973
Target:  5'- aGGCACcucgGCCC-CGAUGUGGgCGGCCacGCg -3'
miRNA:   3'- -UCGUG----UGGGaGCUACAUCgGCUGG--CG- -5'
23211 3' -56.5 NC_005259.1 + 42197 0.72 0.384933
Target:  5'- uGCGCGCCgucgCGAUGgauGCCcGCCGCg -3'
miRNA:   3'- uCGUGUGGga--GCUACau-CGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41489 0.72 0.376279
Target:  5'- gAGCACGaCCUCGGcgGUGGCgggcaGACCGUg -3'
miRNA:   3'- -UCGUGUgGGAGCUa-CAUCGg----CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41402 0.72 0.366913
Target:  5'- uGGCGCGCCgCUCGggGU-GCCcacgaugugcacgGGCCGCc -3'
miRNA:   3'- -UCGUGUGG-GAGCuaCAuCGG-------------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41062 0.72 0.384933
Target:  5'- gAGUGCGCCCacggcUCGAUGUcacgcAGCCGGUCGUa -3'
miRNA:   3'- -UCGUGUGGG-----AGCUACA-----UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 40805 0.71 0.411672
Target:  5'- uAGCGguCACCCUCGG---GGUCGACgCGCa -3'
miRNA:   3'- -UCGU--GUGGGAGCUacaUCGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 40560 0.76 0.19838
Target:  5'- cGCGCGCCCgcgCGGUGUugcuGUCGGCgGCu -3'
miRNA:   3'- uCGUGUGGGa--GCUACAu---CGGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 39876 0.66 0.740514
Target:  5'- gAGCuGCGCCCacaccgaaUCGuUGUcGCCG-CCGCc -3'
miRNA:   3'- -UCG-UGUGGG--------AGCuACAuCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 38851 0.69 0.549777
Target:  5'- uAGCGCGuuCUCGAUGU--UCGACgCGCc -3'
miRNA:   3'- -UCGUGUggGAGCUACAucGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 38814 0.67 0.677761
Target:  5'- cGCccGCGCCCgCGAUGaccgAGUCGAUgGCc -3'
miRNA:   3'- uCG--UGUGGGaGCUACa---UCGGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.