miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 68063 0.68 0.581463
Target:  5'- gAGCACGCgCUcaaUCGAUGU-GCUGAUCaGCu -3'
miRNA:   3'- -UCGUGUG-GG---AGCUACAuCGGCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 67970 0.69 0.508421
Target:  5'- uAGCGCGCgCagCGgcGUGGCC-ACCGCc -3'
miRNA:   3'- -UCGUGUGgGa-GCuaCAUCGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 66012 0.71 0.402631
Target:  5'- uGCGCACCCUCGG---GGCCGcacguguuGCgCGCg -3'
miRNA:   3'- uCGUGUGGGAGCUacaUCGGC--------UG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 64593 0.67 0.656403
Target:  5'- cAGCACACCaaCGAgGUGaCUGACgGCg -3'
miRNA:   3'- -UCGUGUGGgaGCUaCAUcGGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 64449 0.67 0.62423
Target:  5'- gGGCGCuGCCCUUGggGcGGCgaaCGACgCGCa -3'
miRNA:   3'- -UCGUG-UGGGAGCuaCaUCG---GCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 64152 0.67 0.62423
Target:  5'- cGGCgAUGCCCUUGAcGUAGUcggCGACUGUc -3'
miRNA:   3'- -UCG-UGUGGGAGCUaCAUCG---GCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 63850 0.69 0.508421
Target:  5'- aAGCGCguACCggCGAgGUGGCCGGCUGg -3'
miRNA:   3'- -UCGUG--UGGgaGCUaCAUCGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 63193 0.67 0.63496
Target:  5'- -uCGCACCC-CGGUcGUGcGCCucGACCGCc -3'
miRNA:   3'- ucGUGUGGGaGCUA-CAU-CGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 62585 0.67 0.667098
Target:  5'- cGaccuCGCCCUCGAUGagaGGCUGugugagcugacGCCGCa -3'
miRNA:   3'- uCgu--GUGGGAGCUACa--UCGGC-----------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 61788 0.67 0.656403
Target:  5'- uGCACACCggCGGccugauagcccUGUAGCUGugCGa -3'
miRNA:   3'- uCGUGUGGgaGCU-----------ACAUCGGCugGCg -5'
23211 3' -56.5 NC_005259.1 + 60276 0.66 0.713646
Target:  5'- cAGCGCugCCgggcggccaucgucgUCGGUGcGGCCacgGACgGCg -3'
miRNA:   3'- -UCGUGugGG---------------AGCUACaUCGG---CUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 60081 0.68 0.570851
Target:  5'- cGGCuCGCCgacuuuCUCGAUGgcgAGCuCGACCaGCg -3'
miRNA:   3'- -UCGuGUGG------GAGCUACa--UCG-GCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 58647 0.7 0.468434
Target:  5'- -cCAUGCCCUCGcgGUAGCCcGgUGCa -3'
miRNA:   3'- ucGUGUGGGAGCuaCAUCGGcUgGCG- -5'
23211 3' -56.5 NC_005259.1 + 57869 0.89 0.025953
Target:  5'- uGCgACACCCUCGAUGUGGCgGugCGCg -3'
miRNA:   3'- uCG-UGUGGGAGCUACAUCGgCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 56871 1.02 0.003309
Target:  5'- gAGCACACCCUCGAUG-AGCCGACCGCc -3'
miRNA:   3'- -UCGUGUGGGAGCUACaUCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 56161 0.68 0.613507
Target:  5'- gAGCACGUCCUCGuUGgccacgguGCCGACauaCGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuACau------CGGCUG---GCG- -5'
23211 3' -56.5 NC_005259.1 + 55811 0.82 0.090536
Target:  5'- cGGCuCACCCUCGggGUAgGCCG-CCGCg -3'
miRNA:   3'- -UCGuGUGGGAGCuaCAU-CGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 55721 0.67 0.671367
Target:  5'- gAGCACcucGCCCUuguuggcaagcuuggUGGUGUcgAGaCCGugCGCa -3'
miRNA:   3'- -UCGUG---UGGGA---------------GCUACA--UC-GGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 48626 0.66 0.740514
Target:  5'- cGCACugCCUCGccG-AGaCgGGCUGCc -3'
miRNA:   3'- uCGUGugGGAGCuaCaUC-GgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 48202 0.67 0.645687
Target:  5'- gGGCAUGCCgUCGuaGUGGUaCGACCGa -3'
miRNA:   3'- -UCGUGUGGgAGCuaCAUCG-GCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.