Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 35250 | 0.66 | 0.688383 |
Target: 5'- uGCGCACUCgCGuUGUucgcGCCcGCCGCg -3' miRNA: 3'- uCGUGUGGGaGCuACAu---CGGcUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 35528 | 0.71 | 0.439531 |
Target: 5'- gGGCACACCgCcCGccGUcGCCGAuCCGCc -3' miRNA: 3'- -UCGUGUGG-GaGCuaCAuCGGCU-GGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 36103 | 0.68 | 0.581463 |
Target: 5'- cAGCACGCCCUuuuUGGUGagcguaAGCaguugGGCCGCc -3' miRNA: 3'- -UCGUGUGGGA---GCUACa-----UCGg----CUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 36434 | 0.71 | 0.439531 |
Target: 5'- uGCGCAgCgUCGccGaGGUCGACCGCg -3' miRNA: 3'- uCGUGUgGgAGCuaCaUCGGCUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 36662 | 0.66 | 0.740514 |
Target: 5'- cGC-CGCCCUCGcc---GCCG-CCGCc -3' miRNA: 3'- uCGuGUGGGAGCuacauCGGCuGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 37371 | 0.7 | 0.468434 |
Target: 5'- uAGCucACGCCCUCGGcaccGCCcGCCGCg -3' miRNA: 3'- -UCG--UGUGGGAGCUacauCGGcUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 37399 | 0.66 | 0.740514 |
Target: 5'- cGC-CGCCCaUGGUGUuguugacGCCGcCCGCc -3' miRNA: 3'- uCGuGUGGGaGCUACAu------CGGCuGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 38473 | 0.69 | 0.52895 |
Target: 5'- gGGCAgaacaauuUGCaCCUCGAaaagaucggucUGUAGCgGGCCGCc -3' miRNA: 3'- -UCGU--------GUG-GGAGCU-----------ACAUCGgCUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 38814 | 0.67 | 0.677761 |
Target: 5'- cGCccGCGCCCgCGAUGaccgAGUCGAUgGCc -3' miRNA: 3'- uCG--UGUGGGaGCUACa---UCGGCUGgCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 38851 | 0.69 | 0.549777 |
Target: 5'- uAGCGCGuuCUCGAUGU--UCGACgCGCc -3' miRNA: 3'- -UCGUGUggGAGCUACAucGGCUG-GCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 39876 | 0.66 | 0.740514 |
Target: 5'- gAGCuGCGCCCacaccgaaUCGuUGUcGCCG-CCGCc -3' miRNA: 3'- -UCG-UGUGGG--------AGCuACAuCGGCuGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 40560 | 0.76 | 0.19838 |
Target: 5'- cGCGCGCCCgcgCGGUGUugcuGUCGGCgGCu -3' miRNA: 3'- uCGUGUGGGa--GCUACAu---CGGCUGgCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 40805 | 0.71 | 0.411672 |
Target: 5'- uAGCGguCACCCUCGG---GGUCGACgCGCa -3' miRNA: 3'- -UCGU--GUGGGAGCUacaUCGGCUG-GCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 41062 | 0.72 | 0.384933 |
Target: 5'- gAGUGCGCCCacggcUCGAUGUcacgcAGCCGGUCGUa -3' miRNA: 3'- -UCGUGUGGG-----AGCUACA-----UCGGCUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 41402 | 0.72 | 0.366913 |
Target: 5'- uGGCGCGCCgCUCGggGU-GCCcacgaugugcacgGGCCGCc -3' miRNA: 3'- -UCGUGUGG-GAGCuaCAuCGG-------------CUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 41489 | 0.72 | 0.376279 |
Target: 5'- gAGCACGaCCUCGGcgGUGGCgggcaGACCGUg -3' miRNA: 3'- -UCGUGUgGGAGCUa-CAUCGg----CUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 42197 | 0.72 | 0.384933 |
Target: 5'- uGCGCGCCgucgCGAUGgauGCCcGCCGCg -3' miRNA: 3'- uCGUGUGGga--GCUACau-CGGcUGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 42640 | 0.74 | 0.282973 |
Target: 5'- aGGCACcucgGCCC-CGAUGUGGgCGGCCacGCg -3' miRNA: 3'- -UCGUG----UGGGaGCUACAUCgGCUGG--CG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 42930 | 0.72 | 0.351116 |
Target: 5'- gAGCAUgagGCCCUCGccGUGGgCGagGCCGCc -3' miRNA: 3'- -UCGUG---UGGGAGCuaCAUCgGC--UGGCG- -5' |
|||||||
23211 | 3' | -56.5 | NC_005259.1 | + | 43860 | 0.66 | 0.688383 |
Target: 5'- gAGCGCACCCgugaCGAcaccggcagcguUGccGCCGAcauugcCCGCg -3' miRNA: 3'- -UCGUGUGGGa---GCU------------ACauCGGCU------GGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home