Results 41 - 52 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 35661 | 0.71 | 0.178758 |
Target: 5'- aGgGUGGCCaGCgCGguGguGGUgcacagcgacgccGUGCCCg -3' miRNA: 3'- -CgCACCGG-CG-GCguCguCCG-------------CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 45526 | 0.72 | 0.142058 |
Target: 5'- gGUGuUGGCCGCCGUggcugcgAGCGGGU-UGCUCg -3' miRNA: 3'- -CGC-ACCGGCGGCG-------UCGUCCGcACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 37275 | 0.72 | 0.141692 |
Target: 5'- ---aGGCCGCC-CGGCAGGacuugcauggcgGUGCCCg -3' miRNA: 3'- cgcaCCGGCGGcGUCGUCCg-----------CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 26414 | 0.73 | 0.114759 |
Target: 5'- cGCGgcgGuGCCGCCGUagaacgcaccgccgAGCGGGCGgGCCg -3' miRNA: 3'- -CGCa--C-CGGCGGCG--------------UCGUCCGCaCGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 43962 | 0.73 | 0.115665 |
Target: 5'- gGCGgGGCCGCCGCcuGaccgaGGGCgGUGCCg -3' miRNA: 3'- -CGCaCCGGCGGCGu-Cg----UCCG-CACGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 67983 | 0.73 | 0.121879 |
Target: 5'- gGCGUGGCCaCCGCcGCGaGCGUcgacuuGCCCu -3' miRNA: 3'- -CGCACCGGcGGCGuCGUcCGCA------CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 46294 | 0.74 | 0.109748 |
Target: 5'- aGCGgGGCCGCCGUGGCu-GCGUuguucgcgGCCCc -3' miRNA: 3'- -CGCaCCGGCGGCGUCGucCGCA--------CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 29933 | 0.74 | 0.103841 |
Target: 5'- cGCGUGGCCGCCacgcggcccggucGCggcugguggGGCGGGCGgugaccGUCCa -3' miRNA: 3'- -CGCACCGGCGG-------------CG---------UCGUCCGCa-----CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 34845 | 0.74 | 0.098755 |
Target: 5'- ---aGGCCGCC-CAGUucucAGGCGUGUCCu -3' miRNA: 3'- cgcaCCGGCGGcGUCG----UCCGCACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 53521 | 0.75 | 0.093657 |
Target: 5'- uCGUGGCCaGCgGCA-CGGGCucgGUGCCCg -3' miRNA: 3'- cGCACCGG-CGgCGUcGUCCG---CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 31246 | 0.77 | 0.062163 |
Target: 5'- gGCGcGGCggugccgccccacaCGCCGCAGUAGGCGguggcgagaucuUGCCCg -3' miRNA: 3'- -CGCaCCG--------------GCGGCGUCGUCCGC------------ACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 56904 | 1.13 | 0.000112 |
Target: 5'- aGCGUGGCCGCCGCAGCAGGCGUGCCCg -3' miRNA: 3'- -CGCACCGGCGGCGUCGUCCGCACGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home