Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 23615 | 0.67 | 0.33415 |
Target: 5'- cGCGUGGCgGCagccaGaCGGCucGGUGUgguuucgGCCCg -3' miRNA: 3'- -CGCACCGgCGg----C-GUCGu-CCGCA-------CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 6117 | 0.68 | 0.285015 |
Target: 5'- cCGaGGCCGCCGCuacGCGGGCacUGCa- -3' miRNA: 3'- cGCaCCGGCGGCGu--CGUCCGc-ACGgg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 45335 | 0.68 | 0.278387 |
Target: 5'- uGCGUGGCCugcgccgccuggGCCGCcGCguagucgacgGGGUuuUGCCCg -3' miRNA: 3'- -CGCACCGG------------CGGCGuCG----------UCCGc-ACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 68178 | 0.68 | 0.271882 |
Target: 5'- cGCGcuuUGGCaGCuCGCAGCGaagccagcauGGCGUGCUUc -3' miRNA: 3'- -CGC---ACCGgCG-GCGUCGU----------CCGCACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 35511 | 0.68 | 0.265499 |
Target: 5'- cCGUuGCCGCCGCcGcCGGGCacaccGCCCg -3' miRNA: 3'- cGCAcCGGCGGCGuC-GUCCGca---CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 27398 | 0.68 | 0.265499 |
Target: 5'- gGUGUcGGCaGCgGCGGCAGcucgGUGCCCg -3' miRNA: 3'- -CGCA-CCGgCGgCGUCGUCcg--CACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 38743 | 0.68 | 0.265499 |
Target: 5'- gGCgGUGGcCCGCCGCAGgCcGGUGaGCUg -3' miRNA: 3'- -CG-CACC-GGCGGCGUC-GuCCGCaCGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 57446 | 0.68 | 0.285015 |
Target: 5'- gGCGagguUGGUgcgaCGCUGCGGCAGGcCGgugGCaCCg -3' miRNA: 3'- -CGC----ACCG----GCGGCGUCGUCC-GCa--CG-GG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 50965 | 0.69 | 0.218747 |
Target: 5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3' miRNA: 3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 58566 | 0.69 | 0.229732 |
Target: 5'- gGCGguugGGCCGgaUCGCGGCGcGGC-UGCCg -3' miRNA: 3'- -CGCa---CCGGC--GGCGUCGU-CCGcACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 41685 | 0.69 | 0.229732 |
Target: 5'- uGCGUGGCCaCCGCGcacaCAGGCaUGCagCCg -3' miRNA: 3'- -CGCACCGGcGGCGUc---GUCCGcACG--GG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 51651 | 0.69 | 0.224182 |
Target: 5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3' miRNA: 3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 32353 | 0.69 | 0.234826 |
Target: 5'- cGCGaGGuugaugaCCGCCGUguagGGCGGGCacUGCCCg -3' miRNA: 3'- -CGCaCC-------GGCGGCG----UCGUCCGc-ACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 52021 | 0.69 | 0.235398 |
Target: 5'- aGCGUcaGGCCGCCGCAcuGCGcGCuGUcGCCg -3' miRNA: 3'- -CGCA--CCGGCGGCGU--CGUcCG-CA-CGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 13424 | 0.69 | 0.24118 |
Target: 5'- gGgGUcGCCGCCGgGGCcgcgcuAGGCGUGaCCg -3' miRNA: 3'- -CgCAcCGGCGGCgUCG------UCCGCACgGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 27092 | 0.7 | 0.203112 |
Target: 5'- uGCGgcGGCUGCCauGCGGUGGGCuGUGUCa -3' miRNA: 3'- -CGCa-CCGGCGG--CGUCGUCCG-CACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 8949 | 0.7 | 0.208213 |
Target: 5'- gGUG-GGCgCGCCGUGGaCGGGCaccGUGCCg -3' miRNA: 3'- -CGCaCCG-GCGGCGUC-GUCCG---CACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 60144 | 0.7 | 0.183782 |
Target: 5'- cGCGgccuUGGCCGCCGCcucAGCggccucacGGGCGgcgaacGCCUg -3' miRNA: 3'- -CGC----ACCGGCGGCG---UCG--------UCCGCa-----CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 37210 | 0.7 | 0.213424 |
Target: 5'- cGCcaccGCCGCCGCcGCcgGGGCGcugGCCCg -3' miRNA: 3'- -CGcac-CGGCGGCGuCG--UCCGCa--CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 41401 | 0.7 | 0.213424 |
Target: 5'- --aUGGCgCGCCGCu-CGGG-GUGCCCa -3' miRNA: 3'- cgcACCG-GCGGCGucGUCCgCACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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