Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 35511 | 0.68 | 0.265499 |
Target: 5'- cCGUuGCCGCCGCcGcCGGGCacaccGCCCg -3' miRNA: 3'- cGCAcCGGCGGCGuC-GUCCGca---CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 35661 | 0.71 | 0.178758 |
Target: 5'- aGgGUGGCCaGCgCGguGguGGUgcacagcgacgccGUGCCCg -3' miRNA: 3'- -CgCACCGG-CG-GCguCguCCG-------------CACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 36491 | 0.67 | 0.334905 |
Target: 5'- uCGcGGUCGacggGCAGCucuGGCGUGUCCu -3' miRNA: 3'- cGCaCCGGCgg--CGUCGu--CCGCACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 37210 | 0.7 | 0.213424 |
Target: 5'- cGCcaccGCCGCCGCcGCcgGGGCGcugGCCCg -3' miRNA: 3'- -CGcac-CGGCGGCGuCG--UCCGCa--CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 37275 | 0.72 | 0.141692 |
Target: 5'- ---aGGCCGCC-CGGCAGGacuugcauggcgGUGCCCg -3' miRNA: 3'- cgcaCCGGCGGcGUCGUCCg-----------CACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 38743 | 0.68 | 0.265499 |
Target: 5'- gGCgGUGGcCCGCCGCAGgCcGGUGaGCUg -3' miRNA: 3'- -CG-CACC-GGCGGCGUC-GuCCGCaCGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 41401 | 0.7 | 0.213424 |
Target: 5'- --aUGGCgCGCCGCu-CGGG-GUGCCCa -3' miRNA: 3'- cgcACCG-GCGGCGucGUCCgCACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 41685 | 0.69 | 0.229732 |
Target: 5'- uGCGUGGCCaCCGCGcacaCAGGCaUGCagCCg -3' miRNA: 3'- -CGCACCGGcGGCGUc---GUCCGcACG--GG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 43026 | 0.67 | 0.298645 |
Target: 5'- gGCGauGCCGCCG-AGCAGGCc-GCCg -3' miRNA: 3'- -CGCacCGGCGGCgUCGUCCGcaCGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 43962 | 0.73 | 0.115665 |
Target: 5'- gGCGgGGCCGCCGCcuGaccgaGGGCgGUGCCg -3' miRNA: 3'- -CGCaCCGGCGGCGu-Cg----UCCG-CACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 45335 | 0.68 | 0.278387 |
Target: 5'- uGCGUGGCCugcgccgccuggGCCGCcGCguagucgacgGGGUuuUGCCCg -3' miRNA: 3'- -CGCACCGG------------CGGCGuCG----------UCCGc-ACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 45412 | 0.66 | 0.382525 |
Target: 5'- cGCGcugaUGGCCGCCGCcgcugccucGUAGGcCGgaucucgGUCCu -3' miRNA: 3'- -CGC----ACCGGCGGCGu--------CGUCC-GCa------CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 45526 | 0.72 | 0.142058 |
Target: 5'- gGUGuUGGCCGCCGUggcugcgAGCGGGU-UGCUCg -3' miRNA: 3'- -CGC-ACCGGCGGCG-------UCGUCCGcACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 46294 | 0.74 | 0.109748 |
Target: 5'- aGCGgGGCCGCCGUGGCu-GCGUuguucgcgGCCCc -3' miRNA: 3'- -CGCaCCGGCGGCGUCGucCGCA--------CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 46921 | 0.67 | 0.327403 |
Target: 5'- cGCGUGcGCCGCCG-AGCu----UGCCCg -3' miRNA: 3'- -CGCAC-CGGCGGCgUCGuccgcACGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 47960 | 0.67 | 0.320025 |
Target: 5'- cCGaUGGCCGCCGCGccGCccGCGaauaUGCCg -3' miRNA: 3'- cGC-ACCGGCGGCGU--CGucCGC----ACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 48061 | 0.67 | 0.320025 |
Target: 5'- gGCGgguaGcGCCGCCGCgcccugAGCGauGGUGUugaGCCCg -3' miRNA: 3'- -CGCa---C-CGGCGGCG------UCGU--CCGCA---CGGG- -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 50965 | 0.69 | 0.218747 |
Target: 5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3' miRNA: 3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 51651 | 0.69 | 0.224182 |
Target: 5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3' miRNA: 3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5' |
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23211 | 5' | -63.7 | NC_005259.1 | + | 52021 | 0.69 | 0.235398 |
Target: 5'- aGCGUcaGGCCGCCGCAcuGCGcGCuGUcGCCg -3' miRNA: 3'- -CGCA--CCGGCGGCGU--CGUcCG-CA-CGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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