Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 45412 | 0.66 | 0.382525 |
Target: 5'- cGCGcugaUGGCCGCCGCcgcugccucGUAGGcCGgaucucgGUCCu -3' miRNA: 3'- -CGC----ACCGGCGGCGu--------CGUCC-GCa------CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 45335 | 0.68 | 0.278387 |
Target: 5'- uGCGUGGCCugcgccgccuggGCCGCcGCguagucgacgGGGUuuUGCCCg -3' miRNA: 3'- -CGCACCGG------------CGGCGuCG----------UCCGc-ACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 43962 | 0.73 | 0.115665 |
Target: 5'- gGCGgGGCCGCCGCcuGaccgaGGGCgGUGCCg -3' miRNA: 3'- -CGCaCCGGCGGCGu-Cg----UCCG-CACGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 43026 | 0.67 | 0.298645 |
Target: 5'- gGCGauGCCGCCG-AGCAGGCc-GCCg -3' miRNA: 3'- -CGCacCGGCGGCgUCGUCCGcaCGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 41685 | 0.69 | 0.229732 |
Target: 5'- uGCGUGGCCaCCGCGcacaCAGGCaUGCagCCg -3' miRNA: 3'- -CGCACCGGcGGCGUc---GUCCGcACG--GG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 41401 | 0.7 | 0.213424 |
Target: 5'- --aUGGCgCGCCGCu-CGGG-GUGCCCa -3' miRNA: 3'- cgcACCG-GCGGCGucGUCCgCACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 38743 | 0.68 | 0.265499 |
Target: 5'- gGCgGUGGcCCGCCGCAGgCcGGUGaGCUg -3' miRNA: 3'- -CG-CACC-GGCGGCGUC-GuCCGCaCGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 37275 | 0.72 | 0.141692 |
Target: 5'- ---aGGCCGCC-CGGCAGGacuugcauggcgGUGCCCg -3' miRNA: 3'- cgcaCCGGCGGcGUCGUCCg-----------CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 37210 | 0.7 | 0.213424 |
Target: 5'- cGCcaccGCCGCCGCcGCcgGGGCGcugGCCCg -3' miRNA: 3'- -CGcac-CGGCGGCGuCG--UCCGCa--CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 36491 | 0.67 | 0.334905 |
Target: 5'- uCGcGGUCGacggGCAGCucuGGCGUGUCCu -3' miRNA: 3'- cGCaCCGGCgg--CGUCGu--CCGCACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 35661 | 0.71 | 0.178758 |
Target: 5'- aGgGUGGCCaGCgCGguGguGGUgcacagcgacgccGUGCCCg -3' miRNA: 3'- -CgCACCGG-CG-GCguCguCCG-------------CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 35511 | 0.68 | 0.265499 |
Target: 5'- cCGUuGCCGCCGCcGcCGGGCacaccGCCCg -3' miRNA: 3'- cGCAcCGGCGGCGuC-GUCCGca---CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 34845 | 0.74 | 0.098755 |
Target: 5'- ---aGGCCGCC-CAGUucucAGGCGUGUCCu -3' miRNA: 3'- cgcaCCGGCGGcGUCG----UCCGCACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 32353 | 0.69 | 0.234826 |
Target: 5'- cGCGaGGuugaugaCCGCCGUguagGGCGGGCacUGCCCg -3' miRNA: 3'- -CGCaCC-------GGCGGCG----UCGUCCGc-ACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 31246 | 0.77 | 0.062163 |
Target: 5'- gGCGcGGCggugccgccccacaCGCCGCAGUAGGCGguggcgagaucuUGCCCg -3' miRNA: 3'- -CGCaCCG--------------GCGGCGUCGUCCGC------------ACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 29933 | 0.74 | 0.103841 |
Target: 5'- cGCGUGGCCGCCacgcggcccggucGCggcugguggGGCGGGCGgugaccGUCCa -3' miRNA: 3'- -CGCACCGGCGG-------------CG---------UCGUCCGCa-----CGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 28300 | 0.66 | 0.358161 |
Target: 5'- aCG-GuGCCGCCcugcGCAGCGuagaucGGUGUGCCg -3' miRNA: 3'- cGCaC-CGGCGG----CGUCGU------CCGCACGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 27398 | 0.68 | 0.265499 |
Target: 5'- gGUGUcGGCaGCgGCGGCAGcucgGUGCCCg -3' miRNA: 3'- -CGCA-CCGgCGgCGUCGUCcg--CACGGG- -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 27092 | 0.7 | 0.203112 |
Target: 5'- uGCGgcGGCUGCCauGCGGUGGGCuGUGUCa -3' miRNA: 3'- -CGCa-CCGGCGG--CGUCGUCCG-CACGGg -5' |
|||||||
23211 | 5' | -63.7 | NC_005259.1 | + | 26414 | 0.73 | 0.114759 |
Target: 5'- cGCGgcgGuGCCGCCGUagaacgcaccgccgAGCGGGCGgGCCg -3' miRNA: 3'- -CGCa--C-CGGCGGCG--------------UCGUCCGCaCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home