miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 68178 0.68 0.271882
Target:  5'- cGCGcuuUGGCaGCuCGCAGCGaagccagcauGGCGUGCUUc -3'
miRNA:   3'- -CGC---ACCGgCG-GCGUCGU----------CCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 67983 0.73 0.121879
Target:  5'- gGCGUGGCCaCCGCcGCGaGCGUcgacuuGCCCu -3'
miRNA:   3'- -CGCACCGGcGGCGuCGUcCGCA------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 67928 0.66 0.373465
Target:  5'- cGCGUaGGUCGCgaggaugaucuugCGguGCGGGuUGUGCUg -3'
miRNA:   3'- -CGCA-CCGGCG-------------GCguCGUCC-GCACGGg -5'
23211 5' -63.7 NC_005259.1 + 60553 0.67 0.305646
Target:  5'- uCGUcGGCaugcccggUGCCGaCGGuCAGGCG-GCCCa -3'
miRNA:   3'- cGCA-CCG--------GCGGC-GUC-GUCCGCaCGGG- -5'
23211 5' -63.7 NC_005259.1 + 60144 0.7 0.183782
Target:  5'- cGCGgccuUGGCCGCCGCcucAGCggccucacGGGCGgcgaacGCCUg -3'
miRNA:   3'- -CGC----ACCGGCGGCG---UCG--------UCCGCa-----CGGG- -5'
23211 5' -63.7 NC_005259.1 + 58566 0.69 0.229732
Target:  5'- gGCGguugGGCCGgaUCGCGGCGcGGC-UGCCg -3'
miRNA:   3'- -CGCa---CCGGC--GGCGUCGU-CCGcACGGg -5'
23211 5' -63.7 NC_005259.1 + 57691 0.66 0.342533
Target:  5'- cCGUGGCCagGuuGC--CGGGCuUGCCCg -3'
miRNA:   3'- cGCACCGG--CggCGucGUCCGcACGGG- -5'
23211 5' -63.7 NC_005259.1 + 57446 0.68 0.285015
Target:  5'- gGCGagguUGGUgcgaCGCUGCGGCAGGcCGgugGCaCCg -3'
miRNA:   3'- -CGC----ACCG----GCGGCGUCGUCC-GCa--CG-GG- -5'
23211 5' -63.7 NC_005259.1 + 57173 0.66 0.350285
Target:  5'- cGCGUccucGCCGCCGUAGUu--CG-GCCCg -3'
miRNA:   3'- -CGCAc---CGGCGGCGUCGuccGCaCGGG- -5'
23211 5' -63.7 NC_005259.1 + 56904 1.13 0.000112
Target:  5'- aGCGUGGCCGCCGCAGCAGGCGUGCCCg -3'
miRNA:   3'- -CGCACCGGCGGCGUCGUCCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 55327 0.67 0.298645
Target:  5'- gGgGUGGUCuugGCgGCAGCGguGGCGaUGCCg -3'
miRNA:   3'- -CgCACCGG---CGgCGUCGU--CCGC-ACGGg -5'
23211 5' -63.7 NC_005259.1 + 53521 0.75 0.093657
Target:  5'- uCGUGGCCaGCgGCA-CGGGCucgGUGCCCg -3'
miRNA:   3'- cGCACCGG-CGgCGUcGUCCG---CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 52021 0.69 0.235398
Target:  5'- aGCGUcaGGCCGCCGCAcuGCGcGCuGUcGCCg -3'
miRNA:   3'- -CGCA--CCGGCGGCGU--CGUcCG-CA-CGGg -5'
23211 5' -63.7 NC_005259.1 + 51651 0.69 0.224182
Target:  5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3'
miRNA:   3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 50965 0.69 0.218747
Target:  5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3'
miRNA:   3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 48061 0.67 0.320025
Target:  5'- gGCGgguaGcGCCGCCGCgcccugAGCGauGGUGUugaGCCCg -3'
miRNA:   3'- -CGCa---C-CGGCGGCG------UCGU--CCGCA---CGGG- -5'
23211 5' -63.7 NC_005259.1 + 47960 0.67 0.320025
Target:  5'- cCGaUGGCCGCCGCGccGCccGCGaauaUGCCg -3'
miRNA:   3'- cGC-ACCGGCGGCGU--CGucCGC----ACGGg -5'
23211 5' -63.7 NC_005259.1 + 46921 0.67 0.327403
Target:  5'- cGCGUGcGCCGCCG-AGCu----UGCCCg -3'
miRNA:   3'- -CGCAC-CGGCGGCgUCGuccgcACGGG- -5'
23211 5' -63.7 NC_005259.1 + 46294 0.74 0.109748
Target:  5'- aGCGgGGCCGCCGUGGCu-GCGUuguucgcgGCCCc -3'
miRNA:   3'- -CGCaCCGGCGGCGUCGucCGCA--------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 45526 0.72 0.142058
Target:  5'- gGUGuUGGCCGCCGUggcugcgAGCGGGU-UGCUCg -3'
miRNA:   3'- -CGC-ACCGGCGGCG-------UCGUCCGcACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.