miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 58566 0.69 0.229732
Target:  5'- gGCGguugGGCCGgaUCGCGGCGcGGC-UGCCg -3'
miRNA:   3'- -CGCa---CCGGC--GGCGUCGU-CCGcACGGg -5'
23211 5' -63.7 NC_005259.1 + 41685 0.69 0.229732
Target:  5'- uGCGUGGCCaCCGCGcacaCAGGCaUGCagCCg -3'
miRNA:   3'- -CGCACCGGcGGCGUc---GUCCGcACG--GG- -5'
23211 5' -63.7 NC_005259.1 + 51651 0.69 0.224182
Target:  5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3'
miRNA:   3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 50965 0.69 0.218747
Target:  5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3'
miRNA:   3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 6117 0.68 0.285015
Target:  5'- cCGaGGCCGCCGCuacGCGGGCacUGCa- -3'
miRNA:   3'- cGCaCCGGCGGCGu--CGUCCGc-ACGgg -5'
23211 5' -63.7 NC_005259.1 + 57446 0.68 0.285015
Target:  5'- gGCGagguUGGUgcgaCGCUGCGGCAGGcCGgugGCaCCg -3'
miRNA:   3'- -CGC----ACCG----GCGGCGUCGUCC-GCa--CG-GG- -5'
23211 5' -63.7 NC_005259.1 + 45335 0.68 0.278387
Target:  5'- uGCGUGGCCugcgccgccuggGCCGCcGCguagucgacgGGGUuuUGCCCg -3'
miRNA:   3'- -CGCACCGG------------CGGCGuCG----------UCCGc-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 68178 0.68 0.271882
Target:  5'- cGCGcuuUGGCaGCuCGCAGCGaagccagcauGGCGUGCUUc -3'
miRNA:   3'- -CGC---ACCGgCG-GCGUCGU----------CCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 35511 0.68 0.265499
Target:  5'- cCGUuGCCGCCGCcGcCGGGCacaccGCCCg -3'
miRNA:   3'- cGCAcCGGCGGCGuC-GUCCGca---CGGG- -5'
23211 5' -63.7 NC_005259.1 + 38743 0.68 0.265499
Target:  5'- gGCgGUGGcCCGCCGCAGgCcGGUGaGCUg -3'
miRNA:   3'- -CG-CACC-GGCGGCGUC-GuCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 27398 0.68 0.265499
Target:  5'- gGUGUcGGCaGCgGCGGCAGcucgGUGCCCg -3'
miRNA:   3'- -CGCA-CCGgCGgCGUCGUCcg--CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 48061 0.67 0.320025
Target:  5'- gGCGgguaGcGCCGCCGCgcccugAGCGauGGUGUugaGCCCg -3'
miRNA:   3'- -CGCa---C-CGGCGGCG------UCGU--CCGCA---CGGG- -5'
23211 5' -63.7 NC_005259.1 + 47960 0.67 0.320025
Target:  5'- cCGaUGGCCGCCGCGccGCccGCGaauaUGCCg -3'
miRNA:   3'- cGC-ACCGGCGGCGU--CGucCGC----ACGGg -5'
23211 5' -63.7 NC_005259.1 + 15393 0.67 0.320025
Target:  5'- cCGUGGCCG-CGCAcucccaaggguGCGcuGCGUGCCa -3'
miRNA:   3'- cGCACCGGCgGCGU-----------CGUc-CGCACGGg -5'
23211 5' -63.7 NC_005259.1 + 202 0.67 0.320025
Target:  5'- cGCGUGGCgCGacggcaaGCAGUucGGGCaGUGCUa -3'
miRNA:   3'- -CGCACCG-GCgg-----CGUCG--UCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 20128 0.67 0.305646
Target:  5'- cGCacUGGCUGCCGUcgcgaugacGGCAGcCGgUGCCCu -3'
miRNA:   3'- -CGc-ACCGGCGGCG---------UCGUCcGC-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 60553 0.67 0.305646
Target:  5'- uCGUcGGCaugcccggUGCCGaCGGuCAGGCG-GCCCa -3'
miRNA:   3'- cGCA-CCG--------GCGGC-GUC-GUCCGCaCGGG- -5'
23211 5' -63.7 NC_005259.1 + 43026 0.67 0.298645
Target:  5'- gGCGauGCCGCCG-AGCAGGCc-GCCg -3'
miRNA:   3'- -CGCacCGGCGGCgUCGUCCGcaCGGg -5'
23211 5' -63.7 NC_005259.1 + 55327 0.67 0.298645
Target:  5'- gGgGUGGUCuugGCgGCAGCGguGGCGaUGCCg -3'
miRNA:   3'- -CgCACCGG---CGgCGUCGU--CCGC-ACGGg -5'
23211 5' -63.7 NC_005259.1 + 46921 0.67 0.327403
Target:  5'- cGCGUGcGCCGCCG-AGCu----UGCCCg -3'
miRNA:   3'- -CGCAC-CGGCGGCgUCGuccgcACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.