Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23212 | 3' | -55.2 | NC_005259.1 | + | 4958 | 0.66 | 0.825931 |
Target: 5'- gGCuaCGACGauccggUAUCCGCCgaguucgGCCGAUGGc -3' miRNA: 3'- gCGcaGCUGC------AUAGGCGG-------UGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 43204 | 0.66 | 0.817899 |
Target: 5'- gCGaUGUCGACGc--CCGCCugacccgccgaGCUGAUGAg -3' miRNA: 3'- -GC-GCAGCUGCauaGGCGG-----------UGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 27930 | 0.66 | 0.817899 |
Target: 5'- aGCGguUCGGCGac-CCaGCuCGCCGGUGAa -3' miRNA: 3'- gCGC--AGCUGCauaGG-CG-GUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 35539 | 0.66 | 0.8088 |
Target: 5'- cCGcCGUCGcCG-AUCCGCC--CGAUGAc -3' miRNA: 3'- -GC-GCAGCuGCaUAGGCGGugGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 5076 | 0.66 | 0.799526 |
Target: 5'- cCGgGUCGACGgg-CCgguGUCACCGgcGAu -3' miRNA: 3'- -GCgCAGCUGCauaGG---CGGUGGCuaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 48380 | 0.66 | 0.790087 |
Target: 5'- aCGCGUCuGuuGUcgUUGCCGCCGAc-- -3' miRNA: 3'- -GCGCAG-CugCAuaGGCGGUGGCUacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 28196 | 0.67 | 0.784349 |
Target: 5'- aCGCGUCccacauguguccguaGACGgucgugCCGCCACCGu--- -3' miRNA: 3'- -GCGCAG---------------CUGCaua---GGCGGUGGCuacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 22990 | 0.67 | 0.780493 |
Target: 5'- gGUGUCGACGccgCCgagGUCACCGAgGAc -3' miRNA: 3'- gCGCAGCUGCauaGG---CGGUGGCUaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 25173 | 0.67 | 0.780493 |
Target: 5'- uGgGUcCGAccCGUAcgCCGCCGCCGAUc- -3' miRNA: 3'- gCgCA-GCU--GCAUa-GGCGGUGGCUAcu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 19704 | 0.67 | 0.770755 |
Target: 5'- gGC-UCGcACGUuggCUGCCGCCGAggUGAu -3' miRNA: 3'- gCGcAGC-UGCAua-GGCGGUGGCU--ACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 42179 | 0.67 | 0.760881 |
Target: 5'- -aCGUCGAacUGUAUCCGCUGCgcgccgucgCGAUGGa -3' miRNA: 3'- gcGCAGCU--GCAUAGGCGGUG---------GCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 16152 | 0.67 | 0.760881 |
Target: 5'- aCGagGUUGugGUGUCCacucccgugGCCGCCGAg-- -3' miRNA: 3'- -GCg-CAGCugCAUAGG---------CGGUGGCUacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 45411 | 0.67 | 0.750883 |
Target: 5'- gCGCGcUGAUGg--CCGCCGCCGcUGc -3' miRNA: 3'- -GCGCaGCUGCauaGGCGGUGGCuACu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 19027 | 0.67 | 0.749877 |
Target: 5'- gCGCGUCaGuCGUcggGUCuugaagagaacagCGCCACCGAUGu -3' miRNA: 3'- -GCGCAG-CuGCA---UAG-------------GCGGUGGCUACu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 34038 | 0.67 | 0.744829 |
Target: 5'- uGCGUCGGCGcguucuuguuggcauUGUCCGaCCACgGcgGc -3' miRNA: 3'- gCGCAGCUGC---------------AUAGGC-GGUGgCuaCu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 22506 | 0.68 | 0.720249 |
Target: 5'- aCGCccucgaUGACGUGcgcaCCGUCGCCGGUGAu -3' miRNA: 3'- -GCGca----GCUGCAUa---GGCGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 14478 | 0.68 | 0.720249 |
Target: 5'- aCGC-UCGugGUccgAUCCGCUGCuCGGUGc -3' miRNA: 3'- -GCGcAGCugCA---UAGGCGGUG-GCUACu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 45303 | 0.68 | 0.688873 |
Target: 5'- cCGCGccggUGACGccgaggCCGCCGCCGAa-- -3' miRNA: 3'- -GCGCa---GCUGCaua---GGCGGUGGCUacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 6565 | 0.68 | 0.678298 |
Target: 5'- uGCG-CGGCGUGUCagGCCGCCucgGAc -3' miRNA: 3'- gCGCaGCUGCAUAGg-CGGUGGcuaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 58694 | 0.68 | 0.678298 |
Target: 5'- gGgGUCGGCucGUcgCCGCCGCCGu--- -3' miRNA: 3'- gCgCAGCUG--CAuaGGCGGUGGCuacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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