miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 3' -55.2 NC_005259.1 + 4958 0.66 0.825931
Target:  5'- gGCuaCGACGauccggUAUCCGCCgaguucgGCCGAUGGc -3'
miRNA:   3'- gCGcaGCUGC------AUAGGCGG-------UGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 27930 0.66 0.817899
Target:  5'- aGCGguUCGGCGac-CCaGCuCGCCGGUGAa -3'
miRNA:   3'- gCGC--AGCUGCauaGG-CG-GUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 43204 0.66 0.817899
Target:  5'- gCGaUGUCGACGc--CCGCCugacccgccgaGCUGAUGAg -3'
miRNA:   3'- -GC-GCAGCUGCauaGGCGG-----------UGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 35539 0.66 0.8088
Target:  5'- cCGcCGUCGcCG-AUCCGCC--CGAUGAc -3'
miRNA:   3'- -GC-GCAGCuGCaUAGGCGGugGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 5076 0.66 0.799526
Target:  5'- cCGgGUCGACGgg-CCgguGUCACCGgcGAu -3'
miRNA:   3'- -GCgCAGCUGCauaGG---CGGUGGCuaCU- -5'
23212 3' -55.2 NC_005259.1 + 48380 0.66 0.790087
Target:  5'- aCGCGUCuGuuGUcgUUGCCGCCGAc-- -3'
miRNA:   3'- -GCGCAG-CugCAuaGGCGGUGGCUacu -5'
23212 3' -55.2 NC_005259.1 + 28196 0.67 0.784349
Target:  5'- aCGCGUCccacauguguccguaGACGgucgugCCGCCACCGu--- -3'
miRNA:   3'- -GCGCAG---------------CUGCaua---GGCGGUGGCuacu -5'
23212 3' -55.2 NC_005259.1 + 22990 0.67 0.780493
Target:  5'- gGUGUCGACGccgCCgagGUCACCGAgGAc -3'
miRNA:   3'- gCGCAGCUGCauaGG---CGGUGGCUaCU- -5'
23212 3' -55.2 NC_005259.1 + 25173 0.67 0.780493
Target:  5'- uGgGUcCGAccCGUAcgCCGCCGCCGAUc- -3'
miRNA:   3'- gCgCA-GCU--GCAUa-GGCGGUGGCUAcu -5'
23212 3' -55.2 NC_005259.1 + 19704 0.67 0.770755
Target:  5'- gGC-UCGcACGUuggCUGCCGCCGAggUGAu -3'
miRNA:   3'- gCGcAGC-UGCAua-GGCGGUGGCU--ACU- -5'
23212 3' -55.2 NC_005259.1 + 16152 0.67 0.760881
Target:  5'- aCGagGUUGugGUGUCCacucccgugGCCGCCGAg-- -3'
miRNA:   3'- -GCg-CAGCugCAUAGG---------CGGUGGCUacu -5'
23212 3' -55.2 NC_005259.1 + 42179 0.67 0.760881
Target:  5'- -aCGUCGAacUGUAUCCGCUGCgcgccgucgCGAUGGa -3'
miRNA:   3'- gcGCAGCU--GCAUAGGCGGUG---------GCUACU- -5'
23212 3' -55.2 NC_005259.1 + 45411 0.67 0.750883
Target:  5'- gCGCGcUGAUGg--CCGCCGCCGcUGc -3'
miRNA:   3'- -GCGCaGCUGCauaGGCGGUGGCuACu -5'
23212 3' -55.2 NC_005259.1 + 19027 0.67 0.749877
Target:  5'- gCGCGUCaGuCGUcggGUCuugaagagaacagCGCCACCGAUGu -3'
miRNA:   3'- -GCGCAG-CuGCA---UAG-------------GCGGUGGCUACu -5'
23212 3' -55.2 NC_005259.1 + 34038 0.67 0.744829
Target:  5'- uGCGUCGGCGcguucuuguuggcauUGUCCGaCCACgGcgGc -3'
miRNA:   3'- gCGCAGCUGC---------------AUAGGC-GGUGgCuaCu -5'
23212 3' -55.2 NC_005259.1 + 22506 0.68 0.720249
Target:  5'- aCGCccucgaUGACGUGcgcaCCGUCGCCGGUGAu -3'
miRNA:   3'- -GCGca----GCUGCAUa---GGCGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 14478 0.68 0.720249
Target:  5'- aCGC-UCGugGUccgAUCCGCUGCuCGGUGc -3'
miRNA:   3'- -GCGcAGCugCA---UAGGCGGUG-GCUACu -5'
23212 3' -55.2 NC_005259.1 + 45303 0.68 0.688873
Target:  5'- cCGCGccggUGACGccgaggCCGCCGCCGAa-- -3'
miRNA:   3'- -GCGCa---GCUGCaua---GGCGGUGGCUacu -5'
23212 3' -55.2 NC_005259.1 + 58694 0.68 0.678298
Target:  5'- gGgGUCGGCucGUcgCCGCCGCCGu--- -3'
miRNA:   3'- gCgCAGCUG--CAuaGGCGGUGGCuacu -5'
23212 3' -55.2 NC_005259.1 + 26053 0.68 0.678298
Target:  5'- cCGgGUUGGCcaugCCGCCGCCGAg-- -3'
miRNA:   3'- -GCgCAGCUGcauaGGCGGUGGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.