Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 46528 | 0.77 | 0.161326 |
Target: 5'- aGCCgGUCGGGGAUCGCcgaGAUcuggucgccgACCGCg -3' miRNA: 3'- -CGGgUAGCCCCUGGCGaa-CUG----------UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 56094 | 0.78 | 0.137731 |
Target: 5'- uGCUCGUCGGGGccACCGCgUGGcCACCGa -3' miRNA: 3'- -CGGGUAGCCCC--UGGCGaACU-GUGGCg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 29469 | 0.7 | 0.415397 |
Target: 5'- cGCCCGgcUCGGcauGGACCGCcgUGACuAUCaGCa -3' miRNA: 3'- -CGGGU--AGCC---CCUGGCGa-ACUG-UGG-CG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 25166 | 0.7 | 0.424433 |
Target: 5'- aGCCCGUUGGGuccGAcCCGU---ACGCCGCc -3' miRNA: 3'- -CGGGUAGCCC---CU-GGCGaacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 13335 | 0.68 | 0.510607 |
Target: 5'- aCCCA-CGGcgGGACCGCcc--CGCCGCa -3' miRNA: 3'- cGGGUaGCC--CCUGGCGaacuGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 58685 | 0.68 | 0.510607 |
Target: 5'- uUCCAUCGcGGGGuCgGCUcGuCGCCGCc -3' miRNA: 3'- cGGGUAGC-CCCU-GgCGAaCuGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 21676 | 0.68 | 0.509607 |
Target: 5'- aGCCCAUgaagCGGGGAgggauCCGUUUcgaggacgggucaGACgACCGCc -3' miRNA: 3'- -CGGGUA----GCCCCU-----GGCGAA-------------CUG-UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 11861 | 0.68 | 0.500645 |
Target: 5'- aCCCGUCGGcgaacguGACCGCc--GCACCGUc -3' miRNA: 3'- cGGGUAGCCc------CUGGCGaacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 14290 | 0.68 | 0.500645 |
Target: 5'- uGCCCAaccaccgaugUCGGugcguauGGCCGCccucGACGCCGCc -3' miRNA: 3'- -CGGGU----------AGCCc------CUGGCGaa--CUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 7424 | 0.68 | 0.489788 |
Target: 5'- -gCCGUCGGcGGugcccgcGCCGCaUGGCAgCGCc -3' miRNA: 3'- cgGGUAGCC-CC-------UGGCGaACUGUgGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 57127 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGgcGGGACCGagcaguagUGGCccucccacguGCCGa -3' miRNA: 3'- -CGGGUAGC--CCCUGGCga------ACUG----------UGGCg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 50653 | 0.69 | 0.480987 |
Target: 5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3' miRNA: 3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 46347 | 0.69 | 0.480987 |
Target: 5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3' miRNA: 3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 22182 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGuGGuugcGACCuuGCagacgUUGGcCACCGCg -3' miRNA: 3'- -CGGGUAGC-CC----CUGG--CG-----AACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 66263 | 0.69 | 0.471299 |
Target: 5'- gGCCCGcgcCGGGcGGCgGCUc-ACGCCGCc -3' miRNA: 3'- -CGGGUa--GCCC-CUGgCGAacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 52050 | 0.69 | 0.471299 |
Target: 5'- -gCCGUCGaGGAUCGC--GACGCCGUc -3' miRNA: 3'- cgGGUAGCcCCUGGCGaaCUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 56765 | 1.12 | 0.000485 |
Target: 5'- gGCCCAUCGGGGACCGCUUGACACCGCc -3' miRNA: 3'- -CGGGUAGCCCCUGGCGAACUGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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