Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 57127 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGgcGGGACCGagcaguagUGGCccucccacguGCCGa -3' miRNA: 3'- -CGGGUAGC--CCCUGGCga------ACUG----------UGGCg -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 50653 | 0.69 | 0.480987 |
Target: 5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3' miRNA: 3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 63708 | 0.71 | 0.339646 |
Target: 5'- uGCCCAgCGGGGAUCGg--GGC-CUGCg -3' miRNA: 3'- -CGGGUaGCCCCUGGCgaaCUGuGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 18672 | 0.72 | 0.331873 |
Target: 5'- cGCCCGaguacgucaUCGaGGGuCUGCUUGAgCACgGCg -3' miRNA: 3'- -CGGGU---------AGC-CCCuGGCGAACU-GUGgCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 1540 | 0.73 | 0.267832 |
Target: 5'- gGCaUCAUCGGGG-CCGCguucggggcggUGACGCUGUg -3' miRNA: 3'- -CG-GGUAGCCCCuGGCGa----------ACUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 16568 | 0.74 | 0.242735 |
Target: 5'- cGCCCAcCGGGcaGAUCGCcgagGACAUCGCc -3' miRNA: 3'- -CGGGUaGCCC--CUGGCGaa--CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 34726 | 0.74 | 0.242735 |
Target: 5'- cGCCuCGUCGGGGAaaCCGUUgGugAUCGUg -3' miRNA: 3'- -CGG-GUAGCCCCU--GGCGAaCugUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 19871 | 0.76 | 0.174443 |
Target: 5'- cGCCCG-CcGGGAUCGCc-GACGCCGCg -3' miRNA: 3'- -CGGGUaGcCCCUGGCGaaCUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 46528 | 0.77 | 0.161326 |
Target: 5'- aGCCgGUCGGGGAUCGCcgaGAUcuggucgccgACCGCg -3' miRNA: 3'- -CGGgUAGCCCCUGGCGaa-CUG----------UGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 56094 | 0.78 | 0.137731 |
Target: 5'- uGCUCGUCGGGGccACCGCgUGGcCACCGa -3' miRNA: 3'- -CGGGUAGCCCC--UGGCGaACU-GUGGCg -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 31551 | 0.71 | 0.355585 |
Target: 5'- cGCCUuguaGGGuGCCGCU--GCACCGCg -3' miRNA: 3'- -CGGGuag-CCCcUGGCGAacUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 9686 | 0.71 | 0.372043 |
Target: 5'- uGCCgGUCGaGGucGCCGCUcacugGGCACCGUc -3' miRNA: 3'- -CGGgUAGCcCC--UGGCGAa----CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 46347 | 0.69 | 0.480987 |
Target: 5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3' miRNA: 3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 22182 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGuGGuugcGACCuuGCagacgUUGGcCACCGCg -3' miRNA: 3'- -CGGGUAGC-CC----CUGG--CG-----AACU-GUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 66263 | 0.69 | 0.471299 |
Target: 5'- gGCCCGcgcCGGGcGGCgGCUc-ACGCCGCc -3' miRNA: 3'- -CGGGUa--GCCC-CUGgCGAacUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 52050 | 0.69 | 0.471299 |
Target: 5'- -gCCGUCGaGGAUCGC--GACGCCGUc -3' miRNA: 3'- cgGGUAGCcCCUGGCGaaCUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 25166 | 0.7 | 0.424433 |
Target: 5'- aGCCCGUUGGGuccGAcCCGU---ACGCCGCc -3' miRNA: 3'- -CGGGUAGCCC---CU-GGCGaacUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 29469 | 0.7 | 0.415397 |
Target: 5'- cGCCCGgcUCGGcauGGACCGCcgUGACuAUCaGCa -3' miRNA: 3'- -CGGGU--AGCC---CCUGGCGa-ACUG-UGG-CG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 40697 | 0.7 | 0.40648 |
Target: 5'- gGCCCGaugaUCGGGGugcCCGCcaccacgGucCACCGCa -3' miRNA: 3'- -CGGGU----AGCCCCu--GGCGaa-----Cu-GUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 24550 | 0.71 | 0.380464 |
Target: 5'- aGUCCAgaucggCGGGGugUaCUcgugGGCACCGCa -3' miRNA: 3'- -CGGGUa-----GCCCCugGcGAa---CUGUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home