Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 18672 | 0.72 | 0.331873 |
Target: 5'- cGCCCGaguacgucaUCGaGGGuCUGCUUGAgCACgGCg -3' miRNA: 3'- -CGGGU---------AGC-CCCuGGCGAACU-GUGgCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 19871 | 0.76 | 0.174443 |
Target: 5'- cGCCCG-CcGGGAUCGCc-GACGCCGCg -3' miRNA: 3'- -CGGGUaGcCCCUGGCGaaCUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 21676 | 0.68 | 0.509607 |
Target: 5'- aGCCCAUgaagCGGGGAgggauCCGUUUcgaggacgggucaGACgACCGCc -3' miRNA: 3'- -CGGGUA----GCCCCU-----GGCGAA-------------CUG-UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 22182 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGuGGuugcGACCuuGCagacgUUGGcCACCGCg -3' miRNA: 3'- -CGGGUAGC-CC----CUGG--CG-----AACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 23213 | 0.66 | 0.63477 |
Target: 5'- gGCCCAaggaCGGGuaccguCCGCUcGACGCCa- -3' miRNA: 3'- -CGGGUa---GCCCcu----GGCGAaCUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 24550 | 0.71 | 0.380464 |
Target: 5'- aGUCCAgaucggCGGGGugUaCUcgugGGCACCGCa -3' miRNA: 3'- -CGGGUa-----GCCCCugGcGAa---CUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 25166 | 0.7 | 0.424433 |
Target: 5'- aGCCCGUUGGGuccGAcCCGU---ACGCCGCc -3' miRNA: 3'- -CGGGUAGCCC---CU-GGCGaacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 29469 | 0.7 | 0.415397 |
Target: 5'- cGCCCGgcUCGGcauGGACCGCcgUGACuAUCaGCa -3' miRNA: 3'- -CGGGU--AGCC---CCUGGCGa-ACUG-UGG-CG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 31551 | 0.71 | 0.355585 |
Target: 5'- cGCCUuguaGGGuGCCGCU--GCACCGCg -3' miRNA: 3'- -CGGGuag-CCCcUGGCGAacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 34726 | 0.74 | 0.242735 |
Target: 5'- cGCCuCGUCGGGGAaaCCGUUgGugAUCGUg -3' miRNA: 3'- -CGG-GUAGCCCCU--GGCGAaCugUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 35457 | 0.66 | 0.624248 |
Target: 5'- cGCCCAcCGGc-ACCGCca-GCACCGCc -3' miRNA: 3'- -CGGGUaGCCccUGGCGaacUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 35698 | 0.66 | 0.666288 |
Target: 5'- uGCCCggCGaGGGGUCGC-UGACGagguauCCGCc -3' miRNA: 3'- -CGGGuaGC-CCCUGGCGaACUGU------GGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 37378 | 0.66 | 0.655799 |
Target: 5'- cGCCC-UCGGcaccgcccgccGcGCCGCccaugguguugUUGACGCCGCc -3' miRNA: 3'- -CGGGuAGCC-----------CcUGGCG-----------AACUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 40697 | 0.7 | 0.40648 |
Target: 5'- gGCCCGaugaUCGGGGugcCCGCcaccacgGucCACCGCa -3' miRNA: 3'- -CGGGU----AGCCCCu--GGCGaa-----Cu-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 41658 | 0.66 | 0.655799 |
Target: 5'- cGCUCGgugagCGGGaucugcACCGCgugcgUGGcCACCGCg -3' miRNA: 3'- -CGGGUa----GCCCc-----UGGCGa----ACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 45380 | 0.68 | 0.538916 |
Target: 5'- uGCCCGaggaauuucUCGGGGucGCCGCcgagcgcgcugaUGGCcGCCGCc -3' miRNA: 3'- -CGGGU---------AGCCCC--UGGCGa-----------ACUG-UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 45624 | 0.66 | 0.617937 |
Target: 5'- uGCCCGcCGGgccgggcagcgcgccGGuGCCGCcgUGAaCACCGCc -3' miRNA: 3'- -CGGGUaGCC---------------CC-UGGCGa-ACU-GUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 45749 | 0.68 | 0.537896 |
Target: 5'- cGCaCCGccUCGGGGaugagcacgcccucGCCGggUGccaGCACCGCg -3' miRNA: 3'- -CG-GGU--AGCCCC--------------UGGCgaAC---UGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 46347 | 0.69 | 0.480987 |
Target: 5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3' miRNA: 3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 46528 | 0.77 | 0.161326 |
Target: 5'- aGCCgGUCGGGGAUCGCcgaGAUcuggucgccgACCGCg -3' miRNA: 3'- -CGGgUAGCCCCUGGCGaa-CUG----------UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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