miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23214 5' -52.3 NC_005259.1 + 16311 0.66 0.907406
Target:  5'- -cACGUGU-GAUGuGgGCGGAUACUg -3'
miRNA:   3'- caUGCGCAuCUACuCgCGCUUGUGGu -5'
23214 5' -52.3 NC_005259.1 + 57440 0.66 0.893553
Target:  5'- uUACGCGgcgAGGUuGGUGCGAcGCugCGg -3'
miRNA:   3'- cAUGCGCa--UCUAcUCGCGCU-UGugGU- -5'
23214 5' -52.3 NC_005259.1 + 57340 0.66 0.885472
Target:  5'- uGUGCGCuGUccucucaAGAUGAGagaaCGGGCACCGu -3'
miRNA:   3'- -CAUGCG-CA-------UCUACUCgc--GCUUGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 6204 0.66 0.878623
Target:  5'- -aGCGUGagcgGGGUGAGCcgccGCGccGACACCGu -3'
miRNA:   3'- caUGCGCa---UCUACUCG----CGC--UUGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 43778 0.67 0.870767
Target:  5'- cGUACuCGccgGGcAUGAgcaGCGCGGGCACCGa -3'
miRNA:   3'- -CAUGcGCa--UC-UACU---CGCGCUUGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 3119 0.67 0.870767
Target:  5'- uUGCGCGgcaccGUGGGCaGCGGacgGCACCGc -3'
miRNA:   3'- cAUGCGCauc--UACUCG-CGCU---UGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 33735 0.67 0.862659
Target:  5'- uGU-CGCGUGGAgcggugugcacGAGCaCGAACACCc -3'
miRNA:   3'- -CAuGCGCAUCUa----------CUCGcGCUUGUGGu -5'
23214 5' -52.3 NC_005259.1 + 4345 0.67 0.862659
Target:  5'- cGU-CGCGguGAUGAGCGCcGGACGgCAc -3'
miRNA:   3'- -CAuGCGCauCUACUCGCG-CUUGUgGU- -5'
23214 5' -52.3 NC_005259.1 + 56854 0.67 0.845717
Target:  5'- -aGCGUGUuGGUcAGUGCGAGCACa- -3'
miRNA:   3'- caUGCGCAuCUAcUCGCGCUUGUGgu -5'
23214 5' -52.3 NC_005259.1 + 41656 0.68 0.799533
Target:  5'- -gGCGCuc-GGUGAGCGgGAucuGCACCGc -3'
miRNA:   3'- caUGCGcauCUACUCGCgCU---UGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 10774 0.68 0.799533
Target:  5'- -gGCGgGUcaucgAGGUGGGcCGCGAGCGCa- -3'
miRNA:   3'- caUGCgCA-----UCUACUC-GCGCUUGUGgu -5'
23214 5' -52.3 NC_005259.1 + 21160 0.68 0.786742
Target:  5'- cUACGuCGUcaccgacggcagucGGGUcaucGGCGCGAGCACCAa -3'
miRNA:   3'- cAUGC-GCA--------------UCUAc---UCGCGCUUGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 43949 0.69 0.779739
Target:  5'- -aGCGuCGgcGAUGGGCGgGGcCGCCGc -3'
miRNA:   3'- caUGC-GCauCUACUCGCgCUuGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 30900 0.69 0.759322
Target:  5'- -aACGCG-AGGugugccgguUGAGCGUGAGCagGCCAu -3'
miRNA:   3'- caUGCGCaUCU---------ACUCGCGCUUG--UGGU- -5'
23214 5' -52.3 NC_005259.1 + 57078 0.69 0.759322
Target:  5'- -aACGCGUcgaGGAUGucGgGuCGAGCGCCAu -3'
miRNA:   3'- caUGCGCA---UCUACu-CgC-GCUUGUGGU- -5'
23214 5' -52.3 NC_005259.1 + 52649 0.69 0.759322
Target:  5'- -gGgGCG-AGGUGAGCGaCGAGCAUUg -3'
miRNA:   3'- caUgCGCaUCUACUCGC-GCUUGUGGu -5'
23214 5' -52.3 NC_005259.1 + 41894 0.69 0.748908
Target:  5'- aUACGCaugcgGGAUGAGCGCGGGaGCUc -3'
miRNA:   3'- cAUGCGca---UCUACUCGCGCUUgUGGu -5'
23214 5' -52.3 NC_005259.1 + 26363 0.7 0.716991
Target:  5'- cUGCGCGUAGAUGucGGUgGCGAGC-CUg -3'
miRNA:   3'- cAUGCGCAUCUAC--UCG-CGCUUGuGGu -5'
23214 5' -52.3 NC_005259.1 + 34113 0.71 0.65116
Target:  5'- -aACGUGUcGccGGGCGCGAGCACg- -3'
miRNA:   3'- caUGCGCAuCuaCUCGCGCUUGUGgu -5'
23214 5' -52.3 NC_005259.1 + 34687 0.71 0.644502
Target:  5'- aUugGCGcugcGGAUGAugccgaccaucugccGCGCGAGCGCCu -3'
miRNA:   3'- cAugCGCa---UCUACU---------------CGCGCUUGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.