Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 55478 | 1.09 | 0.002587 |
Target: 5'- uGUACGCGUAGAUGAGCGCGAACACCAg -3' miRNA: 3'- -CAUGCGCAUCUACUCGCGCUUGUGGU- -5' |
|||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 56854 | 0.67 | 0.845717 |
Target: 5'- -aGCGUGUuGGUcAGUGCGAGCACa- -3' miRNA: 3'- caUGCGCAuCUAcUCGCGCUUGUGgu -5' |
|||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 57078 | 0.69 | 0.759322 |
Target: 5'- -aACGCGUcgaGGAUGucGgGuCGAGCGCCAu -3' miRNA: 3'- caUGCGCA---UCUACu-CgC-GCUUGUGGU- -5' |
|||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 57340 | 0.66 | 0.885472 |
Target: 5'- uGUGCGCuGUccucucaAGAUGAGagaaCGGGCACCGu -3' miRNA: 3'- -CAUGCG-CA-------UCUACUCgc--GCUUGUGGU- -5' |
|||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 57440 | 0.66 | 0.893553 |
Target: 5'- uUACGCGgcgAGGUuGGUGCGAcGCugCGg -3' miRNA: 3'- cAUGCGCa--UCUAcUCGCGCU-UGugGU- -5' |
|||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 66924 | 0.74 | 0.447573 |
Target: 5'- -cGCGCGgugcucgaccgGGGUGAGCG-GGACACCGg -3' miRNA: 3'- caUGCGCa----------UCUACUCGCgCUUGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home