miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23215 3' -50.8 NC_005259.1 + 350 0.74 0.53555
Target:  5'- cCACGACCGaaAGCAGGAAaCGaUGAGCAc -3'
miRNA:   3'- -GUGCUGGUcgUUGUUCUU-GC-ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 3111 0.68 0.86208
Target:  5'- gGCGGCCAuugcGCGGCAc---CGUGGGCAg -3'
miRNA:   3'- gUGCUGGU----CGUUGUucuuGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 3307 0.66 0.932163
Target:  5'- -uCGGCgAGCGcuGCGucGACGUGAGCGc -3'
miRNA:   3'- guGCUGgUCGU--UGUucUUGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 4295 0.68 0.853591
Target:  5'- gCACgGACCGGCGGCccu-GCGaUGAGCGc -3'
miRNA:   3'- -GUG-CUGGUCGUUGuucuUGC-ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 5631 0.66 0.932163
Target:  5'- -cCGACCGGaucgugccCGGCGAGGACGgcGGGCGc -3'
miRNA:   3'- guGCUGGUC--------GUUGUUCUUGCa-CUCGU- -5'
23215 3' -50.8 NC_005259.1 + 10204 0.68 0.87751
Target:  5'- gACGACCgGGCAgcucgaccaccACGAGAugGcgcucacUGAGCAc -3'
miRNA:   3'- gUGCUGG-UCGU-----------UGUUCUugC-------ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 14633 0.68 0.870317
Target:  5'- uCACGAUCAauugcGUGACGAuGGCGUGGGCu -3'
miRNA:   3'- -GUGCUGGU-----CGUUGUUcUUGCACUCGu -5'
23215 3' -50.8 NC_005259.1 + 17505 0.66 0.937607
Target:  5'- gGCGACCuuGCcgaucCGAGcuCGUGGGCAc -3'
miRNA:   3'- gUGCUGGu-CGuu---GUUCuuGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 18948 0.76 0.441337
Target:  5'- --aGGCCAGCAACGAGGAUG-GGGUg -3'
miRNA:   3'- gugCUGGUCGUUGUUCUUGCaCUCGu -5'
23215 3' -50.8 NC_005259.1 + 26500 0.75 0.524686
Target:  5'- cCGCGAgcucgccgcCCGGCGAgAAGAGCGcggUGAGCAg -3'
miRNA:   3'- -GUGCU---------GGUCGUUgUUCUUGC---ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 29041 0.67 0.914097
Target:  5'- -cUGACCAaCGACGAGAGcCGcGAGCGc -3'
miRNA:   3'- guGCUGGUcGUUGUUCUU-GCaCUCGU- -5'
23215 3' -50.8 NC_005259.1 + 30901 0.68 0.878296
Target:  5'- aCGCGagguguGCCGGUu----GAGCGUGAGCAg -3'
miRNA:   3'- -GUGC------UGGUCGuuguuCUUGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 36392 0.66 0.926431
Target:  5'- -uUGGCCAGC-GCGAGcGACuUGAGCGc -3'
miRNA:   3'- guGCUGGUCGuUGUUC-UUGcACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 39836 0.68 0.88601
Target:  5'- gCGCGuuggUCGGCGACAGGAugccgGUGAGCu -3'
miRNA:   3'- -GUGCu---GGUCGUUGUUCUug---CACUCGu -5'
23215 3' -50.8 NC_005259.1 + 42563 0.67 0.893451
Target:  5'- -uCGGCgAGCAGCcGGucgucaucgauaGGCGUGAGCGa -3'
miRNA:   3'- guGCUGgUCGUUGuUC------------UUGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 44051 0.67 0.89272
Target:  5'- gACGACCGGCu-CGAGuGCGcugucguUGAGCu -3'
miRNA:   3'- gUGCUGGUCGuuGUUCuUGC-------ACUCGu -5'
23215 3' -50.8 NC_005259.1 + 44868 0.66 0.942762
Target:  5'- --aGACCGGCGGCGAGAuccgacGCGccccacGAGUAu -3'
miRNA:   3'- gugCUGGUCGUUGUUCU------UGCa-----CUCGU- -5'
23215 3' -50.8 NC_005259.1 + 50140 0.66 0.926431
Target:  5'- aCGCGAUUgguuGGCGAUccGGcGCGUGAGCGa -3'
miRNA:   3'- -GUGCUGG----UCGUUGuuCU-UGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 51573 0.67 0.901317
Target:  5'- aACGAuCCGGCAGCcGGugccgacacagccgcACGUGAGCc -3'
miRNA:   3'- gUGCU-GGUCGUUGuUCu--------------UGCACUCGu -5'
23215 3' -50.8 NC_005259.1 + 53695 0.73 0.590882
Target:  5'- uGCGACCGGuCAACGuGAACGUGGuCAc -3'
miRNA:   3'- gUGCUGGUC-GUUGUuCUUGCACUcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.