miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23215 3' -50.8 NC_005259.1 + 55204 1.09 0.003292
Target:  5'- aCACGACCAGCAACAAGAACGUGAGCAu -3'
miRNA:   3'- -GUGCUGGUCGUUGUUCUUGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 57468 0.67 0.920408
Target:  5'- gGCaGGCCGGUGGCAccGGAcACGUcGAGCGu -3'
miRNA:   3'- gUG-CUGGUCGUUGU--UCU-UGCA-CUCGU- -5'
23215 3' -50.8 NC_005259.1 + 57924 0.7 0.79789
Target:  5'- uCGCGACCAGUgccAGCGAGu---UGAGCAc -3'
miRNA:   3'- -GUGCUGGUCG---UUGUUCuugcACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 60961 0.68 0.878296
Target:  5'- gCGCGuCCGGCGGCAGaucGAACcauuccucuucgGUGAGCu -3'
miRNA:   3'- -GUGCuGGUCGUUGUU---CUUG------------CACUCGu -5'
23215 3' -50.8 NC_005259.1 + 62741 0.66 0.947632
Target:  5'- --gGACCGGCGGCAguacgcgguGGuacuCGUGGGCc -3'
miRNA:   3'- gugCUGGUCGUUGU---------UCuu--GCACUCGu -5'
23215 3' -50.8 NC_005259.1 + 63852 0.67 0.920408
Target:  5'- gCGCGuACCGGCGAgGuGGccggcuggccuuGCGUGGGCGu -3'
miRNA:   3'- -GUGC-UGGUCGUUgUuCU------------UGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 64622 0.69 0.807691
Target:  5'- gCGCGACgGGCAGCAGcgcccaccaaucGAGCGUccacGAGUAu -3'
miRNA:   3'- -GUGCUGgUCGUUGUU------------CUUGCA----CUCGU- -5'
23215 3' -50.8 NC_005259.1 + 64810 0.67 0.914097
Target:  5'- -uCGGCCucGGCGGCAAuGAGCGUGuGGUg -3'
miRNA:   3'- guGCUGG--UCGUUGUU-CUUGCAC-UCGu -5'
23215 3' -50.8 NC_005259.1 + 64898 0.69 0.844859
Target:  5'- cCGCGugacACgAGCGACGGcGAGCGUGAGgAu -3'
miRNA:   3'- -GUGC----UGgUCGUUGUU-CUUGCACUCgU- -5'
23215 3' -50.8 NC_005259.1 + 67834 0.67 0.914097
Target:  5'- -uCGACCGGCAGCccg---GUGAGCGg -3'
miRNA:   3'- guGCUGGUCGUUGuucuugCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 68311 0.68 0.878296
Target:  5'- gCGCGuCCGGCGACGGGAucuCGaugaugGGGCu -3'
miRNA:   3'- -GUGCuGGUCGUUGUUCUu--GCa-----CUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.