miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23215 3' -50.8 NC_005259.1 + 53695 0.73 0.590882
Target:  5'- uGCGACCGGuCAACGuGAACGUGGuCAc -3'
miRNA:   3'- gUGCUGGUC-GUUGUuCUUGCACUcGU- -5'
23215 3' -50.8 NC_005259.1 + 57924 0.7 0.79789
Target:  5'- uCGCGACCAGUgccAGCGAGu---UGAGCAc -3'
miRNA:   3'- -GUGCUGGUCG---UUGUUCuugcACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 64622 0.69 0.807691
Target:  5'- gCGCGACgGGCAGCAGcgcccaccaaucGAGCGUccacGAGUAu -3'
miRNA:   3'- -GUGCUGgUCGUUGUU------------CUUGCA----CUCGU- -5'
23215 3' -50.8 NC_005259.1 + 64898 0.69 0.844859
Target:  5'- cCGCGugacACgAGCGACGGcGAGCGUGAGgAu -3'
miRNA:   3'- -GUGC----UGgUCGUUGUU-CUUGCACUCgU- -5'
23215 3' -50.8 NC_005259.1 + 4295 0.68 0.853591
Target:  5'- gCACgGACCGGCGGCccu-GCGaUGAGCGc -3'
miRNA:   3'- -GUG-CUGGUCGUUGuucuUGC-ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 3111 0.68 0.86208
Target:  5'- gGCGGCCAuugcGCGGCAc---CGUGGGCAg -3'
miRNA:   3'- gUGCUGGU----CGUUGUucuuGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 14633 0.68 0.870317
Target:  5'- uCACGAUCAauugcGUGACGAuGGCGUGGGCu -3'
miRNA:   3'- -GUGCUGGU-----CGUUGUUcUUGCACUCGu -5'
23215 3' -50.8 NC_005259.1 + 10204 0.68 0.87751
Target:  5'- gACGACCgGGCAgcucgaccaccACGAGAugGcgcucacUGAGCAc -3'
miRNA:   3'- gUGCUGG-UCGU-----------UGUUCUugC-------ACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 30901 0.68 0.878296
Target:  5'- aCGCGagguguGCCGGUu----GAGCGUGAGCAg -3'
miRNA:   3'- -GUGC------UGGUCGuuguuCUUGCACUCGU- -5'
23215 3' -50.8 NC_005259.1 + 60961 0.68 0.878296
Target:  5'- gCGCGuCCGGCGGCAGaucGAACcauuccucuucgGUGAGCu -3'
miRNA:   3'- -GUGCuGGUCGUUGUU---CUUG------------CACUCGu -5'
23215 3' -50.8 NC_005259.1 + 62741 0.66 0.947632
Target:  5'- --gGACCGGCGGCAguacgcgguGGuacuCGUGGGCc -3'
miRNA:   3'- gugCUGGUCGUUGU---------UCuu--GCACUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.