Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23215 | 3' | -50.8 | NC_005259.1 | + | 62741 | 0.66 | 0.947632 |
Target: 5'- --gGACCGGCGGCAguacgcgguGGuacuCGUGGGCc -3' miRNA: 3'- gugCUGGUCGUUGU---------UCuu--GCACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 30901 | 0.68 | 0.878296 |
Target: 5'- aCGCGagguguGCCGGUu----GAGCGUGAGCAg -3' miRNA: 3'- -GUGC------UGGUCGuuguuCUUGCACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 60961 | 0.68 | 0.878296 |
Target: 5'- gCGCGuCCGGCGGCAGaucGAACcauuccucuucgGUGAGCu -3' miRNA: 3'- -GUGCuGGUCGUUGUU---CUUG------------CACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 68311 | 0.68 | 0.878296 |
Target: 5'- gCGCGuCCGGCGACGGGAucuCGaugaugGGGCu -3' miRNA: 3'- -GUGCuGGUCGUUGUUCUu--GCa-----CUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 39836 | 0.68 | 0.88601 |
Target: 5'- gCGCGuuggUCGGCGACAGGAugccgGUGAGCu -3' miRNA: 3'- -GUGCu---GGUCGUUGUUCUug---CACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 44051 | 0.67 | 0.89272 |
Target: 5'- gACGACCGGCu-CGAGuGCGcugucguUGAGCu -3' miRNA: 3'- gUGCUGGUCGuuGUUCuUGC-------ACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 42563 | 0.67 | 0.893451 |
Target: 5'- -uCGGCgAGCAGCcGGucgucaucgauaGGCGUGAGCGa -3' miRNA: 3'- guGCUGgUCGUUGuUC------------UUGCACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 51573 | 0.67 | 0.901317 |
Target: 5'- aACGAuCCGGCAGCcGGugccgacacagccgcACGUGAGCc -3' miRNA: 3'- gUGCU-GGUCGUUGuUCu--------------UGCACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 64810 | 0.67 | 0.914097 |
Target: 5'- -uCGGCCucGGCGGCAAuGAGCGUGuGGUg -3' miRNA: 3'- guGCUGG--UCGUUGUU-CUUGCAC-UCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 10204 | 0.68 | 0.87751 |
Target: 5'- gACGACCgGGCAgcucgaccaccACGAGAugGcgcucacUGAGCAc -3' miRNA: 3'- gUGCUGG-UCGU-----------UGUUCUugC-------ACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 14633 | 0.68 | 0.870317 |
Target: 5'- uCACGAUCAauugcGUGACGAuGGCGUGGGCu -3' miRNA: 3'- -GUGCUGGU-----CGUUGUUcUUGCACUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 3111 | 0.68 | 0.86208 |
Target: 5'- gGCGGCCAuugcGCGGCAc---CGUGGGCAg -3' miRNA: 3'- gUGCUGGU----CGUUGUucuuGCACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 18948 | 0.76 | 0.441337 |
Target: 5'- --aGGCCAGCAACGAGGAUG-GGGUg -3' miRNA: 3'- gugCUGGUCGUUGUUCUUGCaCUCGu -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 26500 | 0.75 | 0.524686 |
Target: 5'- cCGCGAgcucgccgcCCGGCGAgAAGAGCGcggUGAGCAg -3' miRNA: 3'- -GUGCU---------GGUCGUUgUUCUUGC---ACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 350 | 0.74 | 0.53555 |
Target: 5'- cCACGACCGaaAGCAGGAAaCGaUGAGCAc -3' miRNA: 3'- -GUGCUGGUcgUUGUUCUU-GC-ACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 53695 | 0.73 | 0.590882 |
Target: 5'- uGCGACCGGuCAACGuGAACGUGGuCAc -3' miRNA: 3'- gUGCUGGUC-GUUGUuCUUGCACUcGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 57924 | 0.7 | 0.79789 |
Target: 5'- uCGCGACCAGUgccAGCGAGu---UGAGCAc -3' miRNA: 3'- -GUGCUGGUCG---UUGUUCuugcACUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 64622 | 0.69 | 0.807691 |
Target: 5'- gCGCGACgGGCAGCAGcgcccaccaaucGAGCGUccacGAGUAu -3' miRNA: 3'- -GUGCUGgUCGUUGUU------------CUUGCA----CUCGU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 64898 | 0.69 | 0.844859 |
Target: 5'- cCGCGugacACgAGCGACGGcGAGCGUGAGgAu -3' miRNA: 3'- -GUGC----UGgUCGUUGUU-CUUGCACUCgU- -5' |
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23215 | 3' | -50.8 | NC_005259.1 | + | 4295 | 0.68 | 0.853591 |
Target: 5'- gCACgGACCGGCGGCccu-GCGaUGAGCGc -3' miRNA: 3'- -GUG-CUGGUCGUUGuucuUGC-ACUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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