miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23216 3' -50.5 NC_005259.1 + 962 0.69 0.886425
Target:  5'- cUCGCGcAACGGcucaacGGCGAcgAGAC-ACCg -3'
miRNA:   3'- -GGCGC-UUGCCa-----UCGCUuaUCUGcUGG- -5'
23216 3' -50.5 NC_005259.1 + 3093 0.66 0.963131
Target:  5'- gCCGCGcAGCGaugAGCG----GGCGGCCa -3'
miRNA:   3'- -GGCGC-UUGCca-UCGCuuauCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 5555 0.69 0.900617
Target:  5'- gCCGCGuGgGGUGGUGAcgGcGA-GACCg -3'
miRNA:   3'- -GGCGCuUgCCAUCGCUuaU-CUgCUGG- -5'
23216 3' -50.5 NC_005259.1 + 6166 0.66 0.969891
Target:  5'- gCGcCGAACGGUcgaGGUGAccaAUGGGUGAUCu -3'
miRNA:   3'- gGC-GCUUGCCA---UCGCU---UAUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 6234 0.68 0.919903
Target:  5'- aCCGUGAcCGugGGCGAGUGGGuCGAUa -3'
miRNA:   3'- -GGCGCUuGCcaUCGCUUAUCU-GCUGg -5'
23216 3' -50.5 NC_005259.1 + 6548 0.66 0.972916
Target:  5'- -gGCGAGCGGUgaagcugugcgcGGCGuGUcAGGCcGCCu -3'
miRNA:   3'- ggCGCUUGCCA------------UCGCuUA-UCUGcUGG- -5'
23216 3' -50.5 NC_005259.1 + 8958 0.66 0.975714
Target:  5'- gCCGUGGACGGgcaccGUGccgGGACGuagguGCCa -3'
miRNA:   3'- -GGCGCUUGCCau---CGCuuaUCUGC-----UGG- -5'
23216 3' -50.5 NC_005259.1 + 17196 0.68 0.936734
Target:  5'- gCCGCGcgUGa-GGCGggUAGACGGg- -3'
miRNA:   3'- -GGCGCuuGCcaUCGCuuAUCUGCUgg -5'
23216 3' -50.5 NC_005259.1 + 17800 0.7 0.871204
Target:  5'- aCCGCGAuagcgaggcCGGUgagcucAGCGAGgccaucgacgGGugGGCCg -3'
miRNA:   3'- -GGCGCUu--------GCCA------UCGCUUa---------UCugCUGG- -5'
23216 3' -50.5 NC_005259.1 + 18377 0.84 0.219206
Target:  5'- cCCGaGGGCGGUAGCGAGggAGACGAgCa -3'
miRNA:   3'- -GGCgCUUGCCAUCGCUUa-UCUGCUgG- -5'
23216 3' -50.5 NC_005259.1 + 18779 0.69 0.878178
Target:  5'- aUCGCGGugggcaaGCGGUGGCag--GGACG-CCg -3'
miRNA:   3'- -GGCGCU-------UGCCAUCGcuuaUCUGCuGG- -5'
23216 3' -50.5 NC_005259.1 + 18860 0.7 0.846549
Target:  5'- gCCGUGcAACGGUugcGCGcGUGGGaGGCCa -3'
miRNA:   3'- -GGCGC-UUGCCAu--CGCuUAUCUgCUGG- -5'
23216 3' -50.5 NC_005259.1 + 20451 0.67 0.951118
Target:  5'- aCGaCGAGCcggGGUGGCuc--GGAUGACCg -3'
miRNA:   3'- gGC-GCUUG---CCAUCGcuuaUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 23613 0.68 0.931397
Target:  5'- cCCGCGuGGCGGcAGCc---AGACGGCUc -3'
miRNA:   3'- -GGCGC-UUGCCaUCGcuuaUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 26438 0.73 0.698552
Target:  5'- aCCGcCGAGCGG--GCGGGccGGugGGCCg -3'
miRNA:   3'- -GGC-GCUUGCCauCGCUUa-UCugCUGG- -5'
23216 3' -50.5 NC_005259.1 + 26613 0.72 0.781662
Target:  5'- gCCGCGccggacCGGUAGCcGAUAucGAUGGCCu -3'
miRNA:   3'- -GGCGCuu----GCCAUCGcUUAU--CUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 27919 0.86 0.150485
Target:  5'- gCGCGggUGGUAGCGGuucGGCGACCc -3'
miRNA:   3'- gGCGCuuGCCAUCGCUuauCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 29955 0.66 0.963131
Target:  5'- gUCGCGGcUGGUggGGCGGGcGG-UGACCg -3'
miRNA:   3'- -GGCGCUuGCCA--UCGCUUaUCuGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 30288 0.68 0.931397
Target:  5'- gCGuCGAgcucuACGGUGGCccauUAGACGGCg -3'
miRNA:   3'- gGC-GCU-----UGCCAUCGcuu-AUCUGCUGg -5'
23216 3' -50.5 NC_005259.1 + 32512 0.68 0.919903
Target:  5'- aCCGUGA--GGUAGuCGAGgcGGGCGGCa -3'
miRNA:   3'- -GGCGCUugCCAUC-GCUUa-UCUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.