miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23216 3' -50.5 NC_005259.1 + 33482 0.7 0.863222
Target:  5'- gCCGC--ACGGUAGCGGAaguGAaaaGACUg -3'
miRNA:   3'- -GGCGcuUGCCAUCGCUUau-CUg--CUGG- -5'
23216 3' -50.5 NC_005259.1 + 38319 0.67 0.959383
Target:  5'- uCUGUGucAUGGUGcccgaguugcGCGAGUAGACccuGACCu -3'
miRNA:   3'- -GGCGCu-UGCCAU----------CGCUUAUCUG---CUGG- -5'
23216 3' -50.5 NC_005259.1 + 41483 0.68 0.931397
Target:  5'- gCCGuCGAgcacgaccucgGCGGUGGCGGGcAGACcgugGAUCu -3'
miRNA:   3'- -GGC-GCU-----------UGCCAUCGCUUaUCUG----CUGG- -5'
23216 3' -50.5 NC_005259.1 + 41590 0.66 0.962768
Target:  5'- gCGUGAGCGGUcGCGcgucgguguuucgGAUcgcgAGGCuGACCa -3'
miRNA:   3'- gGCGCUUGCCAuCGC-------------UUA----UCUG-CUGG- -5'
23216 3' -50.5 NC_005259.1 + 43683 0.68 0.918084
Target:  5'- aCCGCcgcCGGUGGCGAAccucuugaaaccgcGCGACCg -3'
miRNA:   3'- -GGCGcuuGCCAUCGCUUauc-----------UGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 43979 0.66 0.966632
Target:  5'- aCCGaGGGCGGU-GCcGAUGGACG-CUg -3'
miRNA:   3'- -GGCgCUUGCCAuCGcUUAUCUGCuGG- -5'
23216 3' -50.5 NC_005259.1 + 44296 0.66 0.972916
Target:  5'- gCGCGAGCGGguuGCccucuuuGACGAgCg -3'
miRNA:   3'- gGCGCUUGCCau-CGcuuau--CUGCUgG- -5'
23216 3' -50.5 NC_005259.1 + 45791 0.72 0.761583
Target:  5'- aCCGCGuuGACGGUGuccugcuuggguGCGuagccggGGAUGACCa -3'
miRNA:   3'- -GGCGC--UUGCCAU------------CGCuua----UCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 46522 0.67 0.95538
Target:  5'- cCCGCGAGcCGGUcGgGGAUcgccgAGAucuggucgcCGACCg -3'
miRNA:   3'- -GGCGCUU-GCCAuCgCUUA-----UCU---------GCUGG- -5'
23216 3' -50.5 NC_005259.1 + 47053 0.73 0.719937
Target:  5'- gCGCGAGCGuGuUGGUGAGcgAGGCGAgCg -3'
miRNA:   3'- gGCGCUUGC-C-AUCGCUUa-UCUGCUgG- -5'
23216 3' -50.5 NC_005259.1 + 47789 0.66 0.966632
Target:  5'- aUCGCGcAGCGGUccgacGGUGAGUcgcgAGACcucgcgGGCCa -3'
miRNA:   3'- -GGCGC-UUGCCA-----UCGCUUA----UCUG------CUGG- -5'
23216 3' -50.5 NC_005259.1 + 49984 0.67 0.951118
Target:  5'- gCGCGcACGGaucGCGugcGGACGGCUg -3'
miRNA:   3'- gGCGCuUGCCau-CGCuuaUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 50981 0.68 0.925787
Target:  5'- gCgGCGAGCGGUGuCGAGUcaccGGCGAaaaaCCg -3'
miRNA:   3'- -GgCGCUUGCCAUcGCUUAu---CUGCU----GG- -5'
23216 3' -50.5 NC_005259.1 + 53019 0.68 0.913745
Target:  5'- gCGCu-GCGGUGGCGucgAGGCaucguGACCu -3'
miRNA:   3'- gGCGcuUGCCAUCGCuuaUCUG-----CUGG- -5'
23216 3' -50.5 NC_005259.1 + 54512 0.66 0.969891
Target:  5'- gCgGCGAuguGgGGUGGCGggUcGAguaucCGGCCc -3'
miRNA:   3'- -GgCGCU---UgCCAUCGCuuAuCU-----GCUGG- -5'
23216 3' -50.5 NC_005259.1 + 54892 1.15 0.002108
Target:  5'- aCCGCGAACGGUAGCGAAUAGACGACCu -3'
miRNA:   3'- -GGCGCUUGCCAUCGCUUAUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 55338 0.69 0.899932
Target:  5'- -gGCGGcaGCGGUGGCGAugccgaacgccugAgcGACGGCa -3'
miRNA:   3'- ggCGCU--UGCCAUCGCU-------------UauCUGCUGg -5'
23216 3' -50.5 NC_005259.1 + 56483 0.67 0.95538
Target:  5'- gUCGCGAaaccguccucgACGGUGGCGAu--GAUucCCu -3'
miRNA:   3'- -GGCGCU-----------UGCCAUCGCUuauCUGcuGG- -5'
23216 3' -50.5 NC_005259.1 + 59401 0.68 0.925787
Target:  5'- gCGCGAGCGuGaccucgcgcaUGGCGuc--GGCGGCCa -3'
miRNA:   3'- gGCGCUUGC-C----------AUCGCuuauCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 61014 0.73 0.719937
Target:  5'- aCgGUGAGCuuccacucGGUGGCGGcgAGGuCGACCg -3'
miRNA:   3'- -GgCGCUUG--------CCAUCGCUuaUCU-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.