miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23216 3' -50.5 NC_005259.1 + 45791 0.72 0.761583
Target:  5'- aCCGCGuuGACGGUGuccugcuuggguGCGuagccggGGAUGACCa -3'
miRNA:   3'- -GGCGC--UUGCCAU------------CGCuua----UCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 44296 0.66 0.972916
Target:  5'- gCGCGAGCGGguuGCccucuuuGACGAgCg -3'
miRNA:   3'- gGCGCUUGCCau-CGcuuau--CUGCUgG- -5'
23216 3' -50.5 NC_005259.1 + 43979 0.66 0.966632
Target:  5'- aCCGaGGGCGGU-GCcGAUGGACG-CUg -3'
miRNA:   3'- -GGCgCUUGCCAuCGcUUAUCUGCuGG- -5'
23216 3' -50.5 NC_005259.1 + 43683 0.68 0.918084
Target:  5'- aCCGCcgcCGGUGGCGAAccucuugaaaccgcGCGACCg -3'
miRNA:   3'- -GGCGcuuGCCAUCGCUUauc-----------UGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 41590 0.66 0.962768
Target:  5'- gCGUGAGCGGUcGCGcgucgguguuucgGAUcgcgAGGCuGACCa -3'
miRNA:   3'- gGCGCUUGCCAuCGC-------------UUA----UCUG-CUGG- -5'
23216 3' -50.5 NC_005259.1 + 41483 0.68 0.931397
Target:  5'- gCCGuCGAgcacgaccucgGCGGUGGCGGGcAGACcgugGAUCu -3'
miRNA:   3'- -GGC-GCU-----------UGCCAUCGCUUaUCUG----CUGG- -5'
23216 3' -50.5 NC_005259.1 + 38319 0.67 0.959383
Target:  5'- uCUGUGucAUGGUGcccgaguugcGCGAGUAGACccuGACCu -3'
miRNA:   3'- -GGCGCu-UGCCAU----------CGCUUAUCUG---CUGG- -5'
23216 3' -50.5 NC_005259.1 + 33482 0.7 0.863222
Target:  5'- gCCGC--ACGGUAGCGGAaguGAaaaGACUg -3'
miRNA:   3'- -GGCGcuUGCCAUCGCUUau-CUg--CUGG- -5'
23216 3' -50.5 NC_005259.1 + 32512 0.68 0.919903
Target:  5'- aCCGUGA--GGUAGuCGAGgcGGGCGGCa -3'
miRNA:   3'- -GGCGCUugCCAUC-GCUUa-UCUGCUGg -5'
23216 3' -50.5 NC_005259.1 + 30288 0.68 0.931397
Target:  5'- gCGuCGAgcucuACGGUGGCccauUAGACGGCg -3'
miRNA:   3'- gGC-GCU-----UGCCAUCGcuu-AUCUGCUGg -5'
23216 3' -50.5 NC_005259.1 + 29955 0.66 0.963131
Target:  5'- gUCGCGGcUGGUggGGCGGGcGG-UGACCg -3'
miRNA:   3'- -GGCGCUuGCCA--UCGCUUaUCuGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 27919 0.86 0.150485
Target:  5'- gCGCGggUGGUAGCGGuucGGCGACCc -3'
miRNA:   3'- gGCGCuuGCCAUCGCUuauCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 26613 0.72 0.781662
Target:  5'- gCCGCGccggacCGGUAGCcGAUAucGAUGGCCu -3'
miRNA:   3'- -GGCGCuu----GCCAUCGcUUAU--CUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 26438 0.73 0.698552
Target:  5'- aCCGcCGAGCGG--GCGGGccGGugGGCCg -3'
miRNA:   3'- -GGC-GCUUGCCauCGCUUa-UCugCUGG- -5'
23216 3' -50.5 NC_005259.1 + 23613 0.68 0.931397
Target:  5'- cCCGCGuGGCGGcAGCc---AGACGGCUc -3'
miRNA:   3'- -GGCGC-UUGCCaUCGcuuaUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 20451 0.67 0.951118
Target:  5'- aCGaCGAGCcggGGUGGCuc--GGAUGACCg -3'
miRNA:   3'- gGC-GCUUG---CCAUCGcuuaUCUGCUGG- -5'
23216 3' -50.5 NC_005259.1 + 18860 0.7 0.846549
Target:  5'- gCCGUGcAACGGUugcGCGcGUGGGaGGCCa -3'
miRNA:   3'- -GGCGC-UUGCCAu--CGCuUAUCUgCUGG- -5'
23216 3' -50.5 NC_005259.1 + 18779 0.69 0.878178
Target:  5'- aUCGCGGugggcaaGCGGUGGCag--GGACG-CCg -3'
miRNA:   3'- -GGCGCU-------UGCCAUCGcuuaUCUGCuGG- -5'
23216 3' -50.5 NC_005259.1 + 18377 0.84 0.219206
Target:  5'- cCCGaGGGCGGUAGCGAGggAGACGAgCa -3'
miRNA:   3'- -GGCgCUUGCCAUCGCUUa-UCUGCUgG- -5'
23216 3' -50.5 NC_005259.1 + 17800 0.7 0.871204
Target:  5'- aCCGCGAuagcgaggcCGGUgagcucAGCGAGgccaucgacgGGugGGCCg -3'
miRNA:   3'- -GGCGCUu--------GCCA------UCGCUUa---------UCugCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.