Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 32512 | 0.68 | 0.919903 |
Target: 5'- aCCGUGA--GGUAGuCGAGgcGGGCGGCa -3' miRNA: 3'- -GGCGCUugCCAUC-GCUUa-UCUGCUGg -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 6234 | 0.68 | 0.919903 |
Target: 5'- aCCGUGAcCGugGGCGAGUGGGuCGAUa -3' miRNA: 3'- -GGCGCUuGCcaUCGCUUAUCU-GCUGg -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 50981 | 0.68 | 0.925787 |
Target: 5'- gCgGCGAGCGGUGuCGAGUcaccGGCGAaaaaCCg -3' miRNA: 3'- -GgCGCUUGCCAUcGCUUAu---CUGCU----GG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 59401 | 0.68 | 0.925787 |
Target: 5'- gCGCGAGCGuGaccucgcgcaUGGCGuc--GGCGGCCa -3' miRNA: 3'- gGCGCUUGC-C----------AUCGCuuauCUGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 23613 | 0.68 | 0.931397 |
Target: 5'- cCCGCGuGGCGGcAGCc---AGACGGCUc -3' miRNA: 3'- -GGCGC-UUGCCaUCGcuuaUCUGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 41483 | 0.68 | 0.931397 |
Target: 5'- gCCGuCGAgcacgaccucgGCGGUGGCGGGcAGACcgugGAUCu -3' miRNA: 3'- -GGC-GCU-----------UGCCAUCGCUUaUCUG----CUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 30288 | 0.68 | 0.931397 |
Target: 5'- gCGuCGAgcucuACGGUGGCccauUAGACGGCg -3' miRNA: 3'- gGC-GCU-----UGCCAUCGcuu-AUCUGCUGg -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 17196 | 0.68 | 0.936734 |
Target: 5'- gCCGCGcgUGa-GGCGggUAGACGGg- -3' miRNA: 3'- -GGCGCuuGCcaUCGCuuAUCUGCUgg -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 20451 | 0.67 | 0.951118 |
Target: 5'- aCGaCGAGCcggGGUGGCuc--GGAUGACCg -3' miRNA: 3'- gGC-GCUUG---CCAUCGcuuaUCUGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 64897 | 0.67 | 0.951118 |
Target: 5'- gCCGCGugacacgagcGACGGcgAGCGugaGGAUGACg -3' miRNA: 3'- -GGCGC----------UUGCCa-UCGCuuaUCUGCUGg -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 49984 | 0.67 | 0.951118 |
Target: 5'- gCGCGcACGGaucGCGugcGGACGGCUg -3' miRNA: 3'- gGCGCuUGCCau-CGCuuaUCUGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 46522 | 0.67 | 0.95538 |
Target: 5'- cCCGCGAGcCGGUcGgGGAUcgccgAGAucuggucgcCGACCg -3' miRNA: 3'- -GGCGCUU-GCCAuCgCUUA-----UCU---------GCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 56483 | 0.67 | 0.95538 |
Target: 5'- gUCGCGAaaccguccucgACGGUGGCGAu--GAUucCCu -3' miRNA: 3'- -GGCGCU-----------UGCCAUCGCUuauCUGcuGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 38319 | 0.67 | 0.959383 |
Target: 5'- uCUGUGucAUGGUGcccgaguugcGCGAGUAGACccuGACCu -3' miRNA: 3'- -GGCGCu-UGCCAU----------CGCUUAUCUG---CUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 41590 | 0.66 | 0.962768 |
Target: 5'- gCGUGAGCGGUcGCGcgucgguguuucgGAUcgcgAGGCuGACCa -3' miRNA: 3'- gGCGCUUGCCAuCGC-------------UUA----UCUG-CUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 3093 | 0.66 | 0.963131 |
Target: 5'- gCCGCGcAGCGaugAGCG----GGCGGCCa -3' miRNA: 3'- -GGCGC-UUGCca-UCGCuuauCUGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 29955 | 0.66 | 0.963131 |
Target: 5'- gUCGCGGcUGGUggGGCGGGcGG-UGACCg -3' miRNA: 3'- -GGCGCUuGCCA--UCGCUUaUCuGCUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 43979 | 0.66 | 0.966632 |
Target: 5'- aCCGaGGGCGGU-GCcGAUGGACG-CUg -3' miRNA: 3'- -GGCgCUUGCCAuCGcUUAUCUGCuGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 47789 | 0.66 | 0.966632 |
Target: 5'- aUCGCGcAGCGGUccgacGGUGAGUcgcgAGACcucgcgGGCCa -3' miRNA: 3'- -GGCGC-UUGCCA-----UCGCUUA----UCUG------CUGG- -5' |
|||||||
23216 | 3' | -50.5 | NC_005259.1 | + | 54512 | 0.66 | 0.969891 |
Target: 5'- gCgGCGAuguGgGGUGGCGggUcGAguaucCGGCCc -3' miRNA: 3'- -GgCGCU---UgCCAUCGCuuAuCU-----GCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home