miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 18300 0.73 0.571666
Target:  5'- aGCCGCCGuucuGCCCGGugugcgacACCgagGCcgGUGCg -3'
miRNA:   3'- -CGGCGGC----UGGGUU--------UGGaa-CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 46948 0.74 0.528266
Target:  5'- cGCCGCCGACCgCGuuGAgCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUGG-GU--UUgGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 29388 0.74 0.486145
Target:  5'- cCCGCCGACCUAcACCgaggGCcUcgGCg -3'
miRNA:   3'- cGGCGGCUGGGUuUGGaa--CGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 53247 0.75 0.445686
Target:  5'- cGCCGCCGACaCCGucGCCgccGCUgucgccgGUGCc -3'
miRNA:   3'- -CGGCGGCUG-GGUu-UGGaa-CGAa------UACG- -5'
23217 5' -51.8 NC_005259.1 + 61975 0.78 0.328594
Target:  5'- cGCCGCUG-CCUcGACCUUGCUc-UGCa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGAACGAauACG- -5'
23217 5' -51.8 NC_005259.1 + 21544 0.71 0.693362
Target:  5'- aCUGCCGACUCAgaGACC--GCgUAUGCg -3'
miRNA:   3'- cGGCGGCUGGGU--UUGGaaCGaAUACG- -5'
23217 5' -51.8 NC_005259.1 + 14284 0.7 0.715128
Target:  5'- aCCGCCuGCCCAAccACCgaUGUcgGUGCg -3'
miRNA:   3'- cGGCGGcUGGGUU--UGGa-ACGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 26970 0.69 0.797909
Target:  5'- -gCGCCGugCCGAACUcgGCg-GUGUa -3'
miRNA:   3'- cgGCGGCugGGUUUGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 18666 0.69 0.788059
Target:  5'- uGCCGCCG-CCCGAguACgUcaucgagggucUGCUUGaGCa -3'
miRNA:   3'- -CGGCGGCuGGGUU--UGgA-----------ACGAAUaCG- -5'
23217 5' -51.8 NC_005259.1 + 26143 0.69 0.788059
Target:  5'- cGCCGCCGaggccgagcaGCCCGAaaauGCCc-GCguccUGUGCg -3'
miRNA:   3'- -CGGCGGC----------UGGGUU----UGGaaCGa---AUACG- -5'
23217 5' -51.8 NC_005259.1 + 8065 0.69 0.778044
Target:  5'- cGCCGCCGACaUCGAgaucguGCCgcGCUg--GCg -3'
miRNA:   3'- -CGGCGGCUG-GGUU------UGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 12291 0.7 0.757564
Target:  5'- cGCCGCCGcGCCuCGAugCggGCaaugucgGUGCg -3'
miRNA:   3'- -CGGCGGC-UGG-GUUugGaaCGaa-----UACG- -5'
23217 5' -51.8 NC_005259.1 + 53392 0.7 0.757564
Target:  5'- cGCC-CCGGCCCAaaagGACCgggGCgguucUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CGaau--ACG- -5'
23217 5' -51.8 NC_005259.1 + 43293 0.7 0.757564
Target:  5'- cGCCGCCGACgCGcccGCCUgaaugGCUgcguugGCc -3'
miRNA:   3'- -CGGCGGCUGgGUu--UGGAa----CGAaua---CG- -5'
23217 5' -51.8 NC_005259.1 + 23673 0.7 0.757564
Target:  5'- aCCGCCGACCCcGAGCag-GCgcacGCa -3'
miRNA:   3'- cGGCGGCUGGG-UUUGgaaCGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 67773 0.7 0.73656
Target:  5'- gGCCaCCGACCaCGcgguGACCUUGUUg--GCa -3'
miRNA:   3'- -CGGcGGCUGG-GU----UUGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 46978 0.7 0.73656
Target:  5'- cGCCGCCGAUgaUCGGGCCgagggUGCgccacGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUUGGa----ACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 16431 0.7 0.73656
Target:  5'- cGUCGagCGGCCCAAACCggGCaccgUcgGCa -3'
miRNA:   3'- -CGGCg-GCUGGGUUUGGaaCGa---AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 9551 0.7 0.73656
Target:  5'- aGCUGcCCGGCCUcGACCgcgucgGCgagGUGCu -3'
miRNA:   3'- -CGGC-GGCUGGGuUUGGaa----CGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 56238 0.7 0.715128
Target:  5'- cGCCGCCGACCaCGuugggaucggcGGCCUUGa----GCg -3'
miRNA:   3'- -CGGCGGCUGG-GU-----------UUGGAACgaauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.