miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 36782 0.67 0.892407
Target:  5'- uGCCGCCG-UCCuGACCgcucGCgUcgGCa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGaa--CGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 37216 0.69 0.807582
Target:  5'- cGCCGCCGccGCCgGGGCgCUgGCccGUGCc -3'
miRNA:   3'- -CGGCGGC--UGGgUUUG-GAaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 37255 0.66 0.930919
Target:  5'- uGCCGCCGuugCCAGGCUUgagGCcgcccgGCa -3'
miRNA:   3'- -CGGCGGCug-GGUUUGGAa--CGaaua--CG- -5'
23217 5' -51.8 NC_005259.1 + 37852 0.66 0.906357
Target:  5'- --aGCCGAUgUAGACCUUGCcc--GCg -3'
miRNA:   3'- cggCGGCUGgGUUUGGAACGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 39566 0.73 0.582662
Target:  5'- gGUCGuCCGGCCCG-ACCUcgaUGCUguUGCu -3'
miRNA:   3'- -CGGC-GGCUGGGUuUGGA---ACGAauACG- -5'
23217 5' -51.8 NC_005259.1 + 42225 0.66 0.9252
Target:  5'- cGCCGCCGucCCCGGccaucucgaccACCUcGCgc-UGUg -3'
miRNA:   3'- -CGGCGGCu-GGGUU-----------UGGAaCGaauACG- -5'
23217 5' -51.8 NC_005259.1 + 43216 0.66 0.919199
Target:  5'- cCCGCCuGACCC--GCCgaGCUgAUGa -3'
miRNA:   3'- cGGCGG-CUGGGuuUGGaaCGAaUACg -5'
23217 5' -51.8 NC_005259.1 + 43293 0.7 0.757564
Target:  5'- cGCCGCCGACgCGcccGCCUgaaugGCUgcguugGCc -3'
miRNA:   3'- -CGGCGGCUGgGUu--UGGAa----CGAaua---CG- -5'
23217 5' -51.8 NC_005259.1 + 43742 0.66 0.917966
Target:  5'- uGCCGCCGAgCCGGGCaacaucggaagUGUUga-GCa -3'
miRNA:   3'- -CGGCGGCUgGGUUUGga---------ACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 43889 0.67 0.885026
Target:  5'- uGCCGCCGacauuGCCCGcGCCg-GCUgaucgAUGg -3'
miRNA:   3'- -CGGCGGC-----UGGGUuUGGaaCGAa----UACg -5'
23217 5' -51.8 NC_005259.1 + 44470 0.67 0.861325
Target:  5'- uGCCGCCG-CCCuGGCCggGCcaguugGUGa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGaaCGaa----UACg -5'
23217 5' -51.8 NC_005259.1 + 45626 0.68 0.852927
Target:  5'- cCCGCCGGgCCGGGCagcGCgccgGUGCc -3'
miRNA:   3'- cGGCGGCUgGGUUUGgaaCGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 45959 0.68 0.852927
Target:  5'- cGuuGCCGACguugCCGAGCUUgGCgagUGUGUc -3'
miRNA:   3'- -CggCGGCUG----GGUUUGGAaCGa--AUACG- -5'
23217 5' -51.8 NC_005259.1 + 46692 0.66 0.9252
Target:  5'- aGCCGCCG-CCgCGucCCUcgacGCgcGUGCa -3'
miRNA:   3'- -CGGCGGCuGG-GUuuGGAa---CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 46788 0.67 0.877382
Target:  5'- cGCCggGCCGAacaCCGAGCCU-GCgagcGCa -3'
miRNA:   3'- -CGG--CGGCUg--GGUUUGGAaCGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 46948 0.74 0.528266
Target:  5'- cGCCGCCGACCgCGuuGAgCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUGG-GU--UUgGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 46978 0.7 0.73656
Target:  5'- cGCCGCCGAUgaUCGGGCCgagggUGCgccacGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUUGGa----ACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 47194 0.66 0.930919
Target:  5'- uGCCGUCGGCgaagaaCuuGCCgaGCUUcUGCu -3'
miRNA:   3'- -CGGCGGCUGg-----GuuUGGaaCGAAuACG- -5'
23217 5' -51.8 NC_005259.1 + 47837 0.66 0.9252
Target:  5'- uGCCGCUGACggugcgagcuuuUCGAgcGCCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUG------------GGUU--UGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 48183 0.69 0.797909
Target:  5'- cGCCGCCggGugUCGGACCggGC--AUGCc -3'
miRNA:   3'- -CGGCGG--CugGGUUUGGaaCGaaUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.