miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 18464 0.66 0.906357
Target:  5'- aCCGCCGGuCCUGAGCCgUGCccgacGCc -3'
miRNA:   3'- cGGCGGCU-GGGUUUGGaACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 18574 0.72 0.646976
Target:  5'- cGCCGCCGACCCcgagcAGACCgaccccgAUGUc -3'
miRNA:   3'- -CGGCGGCUGGG-----UUUGGaacgaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 18666 0.69 0.788059
Target:  5'- uGCCGCCG-CCCGAguACgUcaucgagggucUGCUUGaGCa -3'
miRNA:   3'- -CGGCGGCuGGGUU--UGgA-----------ACGAAUaCG- -5'
23217 5' -51.8 NC_005259.1 + 19534 0.68 0.852927
Target:  5'- aCCGCCGugC-AGGCCgacGCgUAUGCc -3'
miRNA:   3'- cGGCGGCugGgUUUGGaa-CGaAUACG- -5'
23217 5' -51.8 NC_005259.1 + 20111 0.66 0.9252
Target:  5'- aGCCGCCGuCUCAAgGCCgcacugGCUgccgucGCg -3'
miRNA:   3'- -CGGCGGCuGGGUU-UGGaa----CGAaua---CG- -5'
23217 5' -51.8 NC_005259.1 + 20478 0.66 0.906357
Target:  5'- cGCCGUCGACCuCGAcACCgcccggcaGCUcaUcgGCg -3'
miRNA:   3'- -CGGCGGCUGG-GUU-UGGaa------CGA--AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 21544 0.71 0.693362
Target:  5'- aCUGCCGACUCAgaGACC--GCgUAUGCg -3'
miRNA:   3'- cGGCGGCUGGGU--UUGGaaCGaAUACG- -5'
23217 5' -51.8 NC_005259.1 + 23673 0.7 0.757564
Target:  5'- aCCGCCGACCCcGAGCag-GCgcacGCa -3'
miRNA:   3'- cGGCGGCUGGG-UUUGgaaCGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 23890 0.71 0.682383
Target:  5'- cGCUGCCG-CCCGAGCCgccGCgcccGCc -3'
miRNA:   3'- -CGGCGGCuGGGUUUGGaa-CGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 24136 0.69 0.807582
Target:  5'- cGCCGCCG-CCCugcucGCCgagUUGCgcgAUGUc -3'
miRNA:   3'- -CGGCGGCuGGGuu---UGG---AACGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 25191 0.66 0.912918
Target:  5'- cGCCGCCGAUCCc-ACCgggGUcagcgGCu -3'
miRNA:   3'- -CGGCGGCUGGGuuUGGaa-CGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 26143 0.69 0.788059
Target:  5'- cGCCGCCGaggccgagcaGCCCGAaaauGCCc-GCguccUGUGCg -3'
miRNA:   3'- -CGGCGGC----------UGGGUU----UGGaaCGa---AUACG- -5'
23217 5' -51.8 NC_005259.1 + 26569 0.66 0.924022
Target:  5'- aGCCGCCGAgCaCGAA-CUUGCgcgagggguuUGCc -3'
miRNA:   3'- -CGGCGGCUgG-GUUUgGAACGaau-------ACG- -5'
23217 5' -51.8 NC_005259.1 + 26801 0.72 0.626974
Target:  5'- cGCCGCCG-CCCGguuGGCCgguaccgGCggugGUGCc -3'
miRNA:   3'- -CGGCGGCuGGGU---UUGGaa-----CGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 26970 0.69 0.797909
Target:  5'- -gCGCCGugCCGAACUcgGCg-GUGUa -3'
miRNA:   3'- cgGCGGCugGGUUUGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 27561 0.68 0.835433
Target:  5'- gGCCaCCGAUCCAuACCg-GCgggAUGCc -3'
miRNA:   3'- -CGGcGGCUGGGUuUGGaaCGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 29388 0.74 0.486145
Target:  5'- cCCGCCGACCUAcACCgaggGCcUcgGCg -3'
miRNA:   3'- cGGCGGCUGGGUuUGGaa--CGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 30478 0.72 0.626974
Target:  5'- aGCCucgagguagGCCaGACCCGgcgaGACCUUGCgcgAUGUg -3'
miRNA:   3'- -CGG---------CGG-CUGGGU----UUGGAACGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 35566 0.66 0.899518
Target:  5'- uGCCGCCGACcgCCGAGaucCCguuguaGCUgaggucggGUGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUU---GGaa----CGAa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 35884 0.67 0.892407
Target:  5'- cGCCGCCGAggCAGACCacgGCgagccauucUGCg -3'
miRNA:   3'- -CGGCGGCUggGUUUGGaa-CGaau------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.