Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 9551 | 0.7 | 0.73656 |
Target: 5'- aGCUGcCCGGCCUcGACCgcgucgGCgagGUGCu -3' miRNA: 3'- -CGGC-GGCUGGGuUUGGaa----CGaa-UACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 12291 | 0.7 | 0.757564 |
Target: 5'- cGCCGCCGcGCCuCGAugCggGCaaugucgGUGCg -3' miRNA: 3'- -CGGCGGC-UGG-GUUugGaaCGaa-----UACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 53392 | 0.7 | 0.757564 |
Target: 5'- cGCC-CCGGCCCAaaagGACCgggGCgguucUGCg -3' miRNA: 3'- -CGGcGGCUGGGU----UUGGaa-CGaau--ACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 43293 | 0.7 | 0.757564 |
Target: 5'- cGCCGCCGACgCGcccGCCUgaaugGCUgcguugGCc -3' miRNA: 3'- -CGGCGGCUGgGUu--UGGAa----CGAaua---CG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 23673 | 0.7 | 0.757564 |
Target: 5'- aCCGCCGACCCcGAGCag-GCgcacGCa -3' miRNA: 3'- cGGCGGCUGGG-UUUGgaaCGaauaCG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 8065 | 0.69 | 0.778044 |
Target: 5'- cGCCGCCGACaUCGAgaucguGCCgcGCUg--GCg -3' miRNA: 3'- -CGGCGGCUG-GGUU------UGGaaCGAauaCG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 26143 | 0.69 | 0.788059 |
Target: 5'- cGCCGCCGaggccgagcaGCCCGAaaauGCCc-GCguccUGUGCg -3' miRNA: 3'- -CGGCGGC----------UGGGUU----UGGaaCGa---AUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 18666 | 0.69 | 0.788059 |
Target: 5'- uGCCGCCG-CCCGAguACgUcaucgagggucUGCUUGaGCa -3' miRNA: 3'- -CGGCGGCuGGGUU--UGgA-----------ACGAAUaCG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 52920 | 0.69 | 0.797909 |
Target: 5'- aCCGCCGACUCGAugGCCUggucGCUcaacGCc -3' miRNA: 3'- cGGCGGCUGGGUU--UGGAa---CGAaua-CG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 48183 | 0.69 | 0.797909 |
Target: 5'- cGCCGCCggGugUCGGACCggGC--AUGCc -3' miRNA: 3'- -CGGCGG--CugGGUUUGGaaCGaaUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 26970 | 0.69 | 0.797909 |
Target: 5'- -gCGCCGugCCGAACUcgGCg-GUGUa -3' miRNA: 3'- cgGCGGCugGGUUUGGaaCGaaUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 52370 | 0.69 | 0.807582 |
Target: 5'- aUCGCCGACUCAAGCg--GCUgc-GCa -3' miRNA: 3'- cGGCGGCUGGGUUUGgaaCGAauaCG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 24136 | 0.69 | 0.807582 |
Target: 5'- cGCCGCCG-CCCugcucGCCgagUUGCgcgAUGUc -3' miRNA: 3'- -CGGCGGCuGGGuu---UGG---AACGaa-UACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 37216 | 0.69 | 0.807582 |
Target: 5'- cGCCGCCGccGCCgGGGCgCUgGCccGUGCc -3' miRNA: 3'- -CGGCGGC--UGGgUUUG-GAaCGaaUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 63866 | 0.68 | 0.817067 |
Target: 5'- gGUgGCCGGCU--GGCCUUGCguggGCg -3' miRNA: 3'- -CGgCGGCUGGguUUGGAACGaauaCG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 27561 | 0.68 | 0.835433 |
Target: 5'- gGCCaCCGAUCCAuACCg-GCgggAUGCc -3' miRNA: 3'- -CGGcGGCUGGGUuUGGaaCGaa-UACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 58590 | 0.68 | 0.844294 |
Target: 5'- gGCUGCCGGgCCGGAUCUUuucgagcgccugGCUgAUGUc -3' miRNA: 3'- -CGGCGGCUgGGUUUGGAA------------CGAaUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 17671 | 0.68 | 0.844294 |
Target: 5'- cGCCGUCGACUCGccCCgagggUGCcUAUGa -3' miRNA: 3'- -CGGCGGCUGGGUuuGGa----ACGaAUACg -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 19534 | 0.68 | 0.852927 |
Target: 5'- aCCGCCGugC-AGGCCgacGCgUAUGCc -3' miRNA: 3'- cGGCGGCugGgUUUGGaa-CGaAUACG- -5' |
|||||||
23217 | 5' | -51.8 | NC_005259.1 | + | 45959 | 0.68 | 0.852927 |
Target: 5'- cGuuGCCGACguugCCGAGCUUgGCgagUGUGUc -3' miRNA: 3'- -CggCGGCUG----GGUUUGGAaCGa--AUACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home