miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 54759 1.13 0.001488
Target:  5'- gGCCGCCGACCCAAACCUUGCUUAUGCc -3'
miRNA:   3'- -CGGCGGCUGGGUUUGGAACGAAUACG- -5'
23217 5' -51.8 NC_005259.1 + 61975 0.78 0.328594
Target:  5'- cGCCGCUG-CCUcGACCUUGCUc-UGCa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGAACGAauACG- -5'
23217 5' -51.8 NC_005259.1 + 53247 0.75 0.445686
Target:  5'- cGCCGCCGACaCCGucGCCgccGCUgucgccgGUGCc -3'
miRNA:   3'- -CGGCGGCUG-GGUu-UGGaa-CGAa------UACG- -5'
23217 5' -51.8 NC_005259.1 + 29388 0.74 0.486145
Target:  5'- cCCGCCGACCUAcACCgaggGCcUcgGCg -3'
miRNA:   3'- cGGCGGCUGGGUuUGGaa--CGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 46948 0.74 0.528266
Target:  5'- cGCCGCCGACCgCGuuGAgCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUGG-GU--UUgGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 18300 0.73 0.571666
Target:  5'- aGCCGCCGuucuGCCCGGugugcgacACCgagGCcgGUGCg -3'
miRNA:   3'- -CGGCGGC----UGGGUU--------UGGaa-CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 39566 0.73 0.582662
Target:  5'- gGUCGuCCGGCCCG-ACCUcgaUGCUguUGCu -3'
miRNA:   3'- -CGGC-GGCUGGGUuUGGA---ACGAauACG- -5'
23217 5' -51.8 NC_005259.1 + 63400 0.72 0.613645
Target:  5'- -aCGCCGACCaaugguugcCCUUGCUcAUGCc -3'
miRNA:   3'- cgGCGGCUGGguuu-----GGAACGAaUACG- -5'
23217 5' -51.8 NC_005259.1 + 26801 0.72 0.626974
Target:  5'- cGCCGCCG-CCCGguuGGCCgguaccgGCggugGUGCc -3'
miRNA:   3'- -CGGCGGCuGGGU---UUGGaa-----CGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 7862 0.72 0.626974
Target:  5'- -gCGCCGACCCcgguGGCCcgagUGCUUGgacucggGCa -3'
miRNA:   3'- cgGCGGCUGGGu---UUGGa---ACGAAUa------CG- -5'
23217 5' -51.8 NC_005259.1 + 30478 0.72 0.626974
Target:  5'- aGCCucgagguagGCCaGACCCGgcgaGACCUUGCgcgAUGUg -3'
miRNA:   3'- -CGG---------CGG-CUGGGU----UUGGAACGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 18574 0.72 0.646976
Target:  5'- cGCCGCCGACCCcgagcAGACCgaccccgAUGUc -3'
miRNA:   3'- -CGGCGGCUGGG-----UUUGGaacgaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 17762 0.72 0.649196
Target:  5'- gGCCGCCGcGCgCCGGGCCgaGCgcaccgagcGUGCg -3'
miRNA:   3'- -CGGCGGC-UG-GGUUUGGaaCGaa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 23890 0.71 0.682383
Target:  5'- cGCUGCCG-CCCGAGCCgccGCgcccGCc -3'
miRNA:   3'- -CGGCGGCuGGGUUUGGaa-CGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 21544 0.71 0.693362
Target:  5'- aCUGCCGACUCAgaGACC--GCgUAUGCg -3'
miRNA:   3'- cGGCGGCUGGGU--UUGGaaCGaAUACG- -5'
23217 5' -51.8 NC_005259.1 + 56238 0.7 0.715128
Target:  5'- cGCCGCCGACCaCGuugggaucggcGGCCUUGa----GCg -3'
miRNA:   3'- -CGGCGGCUGG-GU-----------UUGGAACgaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 14284 0.7 0.715128
Target:  5'- aCCGCCuGCCCAAccACCgaUGUcgGUGCg -3'
miRNA:   3'- cGGCGGcUGGGUU--UGGa-ACGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 16431 0.7 0.73656
Target:  5'- cGUCGagCGGCCCAAACCggGCaccgUcgGCa -3'
miRNA:   3'- -CGGCg-GCUGGGUUUGGaaCGa---AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 46978 0.7 0.73656
Target:  5'- cGCCGCCGAUgaUCGGGCCgagggUGCgccacGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUUGGa----ACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 67773 0.7 0.73656
Target:  5'- gGCCaCCGACCaCGcgguGACCUUGUUg--GCa -3'
miRNA:   3'- -CGGcGGCUGG-GU----UUGGAACGAauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.