miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 14347 0.66 0.930919
Target:  5'- gGCCGCCGACgCCAucAACUcacgUGUcUccGCu -3'
miRNA:   3'- -CGGCGGCUG-GGU--UUGGa---ACGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 37255 0.66 0.930919
Target:  5'- uGCCGCCGuugCCAGGCUUgagGCcgcccgGCa -3'
miRNA:   3'- -CGGCGGCug-GGUUUGGAa--CGaaua--CG- -5'
23217 5' -51.8 NC_005259.1 + 47194 0.66 0.930919
Target:  5'- uGCCGUCGGCgaagaaCuuGCCgaGCUUcUGCu -3'
miRNA:   3'- -CGGCGGCUGg-----GuuUGGaaCGAAuACG- -5'
23217 5' -51.8 NC_005259.1 + 47837 0.66 0.9252
Target:  5'- uGCCGCUGACggugcgagcuuuUCGAgcGCCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUG------------GGUU--UGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 42225 0.66 0.9252
Target:  5'- cGCCGCCGucCCCGGccaucucgaccACCUcGCgc-UGUg -3'
miRNA:   3'- -CGGCGGCu-GGGUU-----------UGGAaCGaauACG- -5'
23217 5' -51.8 NC_005259.1 + 46692 0.66 0.9252
Target:  5'- aGCCGCCG-CCgCGucCCUcgacGCgcGUGCa -3'
miRNA:   3'- -CGGCGGCuGG-GUuuGGAa---CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 20111 0.66 0.9252
Target:  5'- aGCCGCCGuCUCAAgGCCgcacugGCUgccgucGCg -3'
miRNA:   3'- -CGGCGGCuGGGUU-UGGaa----CGAaua---CG- -5'
23217 5' -51.8 NC_005259.1 + 26569 0.66 0.924022
Target:  5'- aGCCGCCGAgCaCGAA-CUUGCgcgagggguuUGCc -3'
miRNA:   3'- -CGGCGGCUgG-GUUUgGAACGaau-------ACG- -5'
23217 5' -51.8 NC_005259.1 + 43216 0.66 0.919199
Target:  5'- cCCGCCuGACCC--GCCgaGCUgAUGa -3'
miRNA:   3'- cGGCGG-CUGGGuuUGGaaCGAaUACg -5'
23217 5' -51.8 NC_005259.1 + 13426 0.66 0.919199
Target:  5'- gGUCGCCG-CCgGGGCCgcGCUag-GCg -3'
miRNA:   3'- -CGGCGGCuGGgUUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 847 0.66 0.919199
Target:  5'- gGUCGCUG-CgCAGGCCgagUGCgagcGUGCg -3'
miRNA:   3'- -CGGCGGCuGgGUUUGGa--ACGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 3005 0.66 0.919199
Target:  5'- cGCCGCCGACgCCAucACCccagcGCUccAUGa -3'
miRNA:   3'- -CGGCGGCUG-GGUu-UGGaa---CGAa-UACg -5'
23217 5' -51.8 NC_005259.1 + 43742 0.66 0.917966
Target:  5'- uGCCGCCGAgCCGGGCaacaucggaagUGUUga-GCa -3'
miRNA:   3'- -CGGCGGCUgGGUUUGga---------ACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 6931 0.66 0.912918
Target:  5'- cGCCGCCG-CCUugAGGCCgaGCUc--GCc -3'
miRNA:   3'- -CGGCGGCuGGG--UUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 25191 0.66 0.912918
Target:  5'- cGCCGCCGAUCCc-ACCgggGUcagcgGCu -3'
miRNA:   3'- -CGGCGGCUGGGuuUGGaa-CGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 49396 0.66 0.912918
Target:  5'- -aCGCCGAgCgAGACguaCUUGCUcgAUGCc -3'
miRNA:   3'- cgGCGGCUgGgUUUG---GAACGAa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 18464 0.66 0.906357
Target:  5'- aCCGCCGGuCCUGAGCCgUGCccgacGCc -3'
miRNA:   3'- cGGCGGCU-GGGUUUGGaACGaaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 37852 0.66 0.906357
Target:  5'- --aGCCGAUgUAGACCUUGCcc--GCg -3'
miRNA:   3'- cggCGGCUGgGUUUGGAACGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 20478 0.66 0.906357
Target:  5'- cGCCGUCGACCuCGAcACCgcccggcaGCUcaUcgGCg -3'
miRNA:   3'- -CGGCGGCUGG-GUU-UGGaa------CGA--AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 49183 0.66 0.899518
Target:  5'- cGCC-CCGAUCCGaaagGACCgggGCgguuuccgUUGUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CG--------AAUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.