miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 68697 0.71 0.543755
Target:  5'- -uGAUCGAGGCGGGCAG-CGCgUCGGu -3'
miRNA:   3'- auUUGGCUCUGUCUGUUgGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 67734 0.71 0.50217
Target:  5'- cGAuCCGAuaccGGCGGcCAcuagGCCGCCCCGGc -3'
miRNA:   3'- aUUuGGCU----CUGUCuGU----UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 63658 0.66 0.815103
Target:  5'- -uGGCCGGGACgccGGACAccucgggcaccGgCGCgCCGGg -3'
miRNA:   3'- auUUGGCUCUG---UCUGU-----------UgGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 60534 0.73 0.405194
Target:  5'- cGGGCCGGGAC--GCAGCCGCucgucggcaugCCCGGu -3'
miRNA:   3'- aUUUGGCUCUGucUGUUGGCG-----------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 59496 0.67 0.746761
Target:  5'- -uAGCCGAGAguGuC-ACCGCCCgGc -3'
miRNA:   3'- auUUGGCUCUguCuGuUGGCGGGgCc -5'
23219 3' -54.7 NC_005259.1 + 53373 0.92 0.024683
Target:  5'- cUAAACCGAGACAGcaAACCGCCCCGGc -3'
miRNA:   3'- -AUUUGGCUCUGUCugUUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 52458 0.7 0.564974
Target:  5'- -cGGCgGAuGGCAGACcACCGCCCgCGa -3'
miRNA:   3'- auUUGgCU-CUGUCUGuUGGCGGG-GCc -5'
23219 3' -54.7 NC_005259.1 + 52268 0.76 0.27694
Target:  5'- gGGGCCG-GGCAGACAggACCGgCCCGa -3'
miRNA:   3'- aUUUGGCuCUGUCUGU--UGGCgGGGCc -5'
23219 3' -54.7 NC_005259.1 + 52151 0.73 0.396155
Target:  5'- --cGCCGAGGCAGGCAG-CGCCgaGGc -3'
miRNA:   3'- auuUGGCUCUGUCUGUUgGCGGggCC- -5'
23219 3' -54.7 NC_005259.1 + 49991 0.67 0.776943
Target:  5'- cGGAUCGcGuGCGGACGGCUGCCCuCGu -3'
miRNA:   3'- aUUUGGCuC-UGUCUGUUGGCGGG-GCc -5'
23219 3' -54.7 NC_005259.1 + 48636 0.66 0.786727
Target:  5'- --cGCCGAGACGGGCugccaGAUCGUCgCCa- -3'
miRNA:   3'- auuUGGCUCUGUCUG-----UUGGCGG-GGcc -5'
23219 3' -54.7 NC_005259.1 + 48435 0.67 0.740593
Target:  5'- --cACCGAGGCgcgAGGCAgcggcagcgcguuccACCGCgCgCCGGg -3'
miRNA:   3'- auuUGGCUCUG---UCUGU---------------UGGCG-G-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 48118 0.77 0.243482
Target:  5'- gAAACCGAGcACAccgccucGACcaccGCCGCCCCGGc -3'
miRNA:   3'- aUUUGGCUC-UGU-------CUGu---UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 47941 0.66 0.824203
Target:  5'- gAAGCCGAuGACGgcggugccGAUGGCCGCCgCGc -3'
miRNA:   3'- aUUUGGCU-CUGU--------CUGUUGGCGGgGCc -5'
23219 3' -54.7 NC_005259.1 + 47491 0.66 0.7954
Target:  5'- --cACCGAGGCGcGGCAggaacacGCUGCCCUc- -3'
miRNA:   3'- auuUGGCUCUGU-CUGU-------UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 47281 0.76 0.27694
Target:  5'- --cACCGAG-CAGACcGCCGUCgCCGGa -3'
miRNA:   3'- auuUGGCUCuGUCUGuUGGCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 47081 0.71 0.542701
Target:  5'- --cGCCGAGACgauGGGCAGCacgaucuCGCCCCa- -3'
miRNA:   3'- auuUGGCUCUG---UCUGUUG-------GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 46909 0.66 0.805817
Target:  5'- --cGCCGAG-CAGuccGCGugCGCCgCCGa -3'
miRNA:   3'- auuUGGCUCuGUC---UGUugGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 45738 0.74 0.369833
Target:  5'- --cACCGAGGCc-GCGcACCGCCUCGGg -3'
miRNA:   3'- auuUGGCUCUGucUGU-UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 45628 0.69 0.651305
Target:  5'- --cGCCGGGcCGGGCAG-CGCgCCGGu -3'
miRNA:   3'- auuUGGCUCuGUCUGUUgGCGgGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.