miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 778 0.67 0.776943
Target:  5'- --cGCCGAGGCG----GCUGCCCuCGGu -3'
miRNA:   3'- auuUGGCUCUGUcuguUGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 1126 0.72 0.471915
Target:  5'- -cAGgCGGGACAGAC--CCGCCCCa- -3'
miRNA:   3'- auUUgGCUCUGUCUGuuGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 1850 0.7 0.586403
Target:  5'- --cGCCGAGGCcgAGAaAGCCGCCgCCGc -3'
miRNA:   3'- auuUGGCUCUG--UCUgUUGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 1910 0.66 0.824203
Target:  5'- --uGCCGAGGaAGcGC-GCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCUgUC-UGuUGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 3127 0.67 0.767013
Target:  5'- --cACCGuGggcaGCGGACGgcACCGCCCgUGGg -3'
miRNA:   3'- auuUGGCuC----UGUCUGU--UGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 4221 0.66 0.796355
Target:  5'- gAGAUCGAG-CAGGCcaAGCagGCCCCGc -3'
miRNA:   3'- aUUUGGCUCuGUCUG--UUGg-CGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 4511 0.67 0.776943
Target:  5'- --cGCCGGGAguGGCGcuGCgCGgcaCCCCGGu -3'
miRNA:   3'- auuUGGCUCUguCUGU--UG-GC---GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 6109 0.69 0.629638
Target:  5'- --cGCCGAGGCcgAGGCcGCCGCUacgCGGg -3'
miRNA:   3'- auuUGGCUCUG--UCUGuUGGCGGg--GCC- -5'
23219 3' -54.7 NC_005259.1 + 6521 0.69 0.618804
Target:  5'- --cGCCGuGcGCGcGACAACCGgCCUCGGg -3'
miRNA:   3'- auuUGGCuC-UGU-CUGUUGGC-GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 7850 0.75 0.305676
Target:  5'- ----aCGGGACGGACcgcGCCGaCCCCGGu -3'
miRNA:   3'- auuugGCUCUGUCUGu--UGGC-GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 8283 0.65 0.832225
Target:  5'- --uACCGGGugcGCGGGCAcccgcacggaaacGCCGCCUuguCGGa -3'
miRNA:   3'- auuUGGCUC---UGUCUGU-------------UGGCGGG---GCC- -5'
23219 3' -54.7 NC_005259.1 + 8957 0.74 0.387248
Target:  5'- --cGCCGuGGACGGGC-ACCGUgCCGGg -3'
miRNA:   3'- auuUGGC-UCUGUCUGuUGGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 8992 0.67 0.746761
Target:  5'- -cAGCgGcGACGG-CAGCCGCCUCGu -3'
miRNA:   3'- auUUGgCuCUGUCuGUUGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 9046 0.67 0.746761
Target:  5'- -uGugCGGGGCGG-UAACCGgCUCGGu -3'
miRNA:   3'- auUugGCUCUGUCuGUUGGCgGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 9100 0.7 0.554335
Target:  5'- --cGCCGAgGGCGGGgAACucaaucccacgCGCCCCGGu -3'
miRNA:   3'- auuUGGCU-CUGUCUgUUG-----------GCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 11312 0.71 0.50217
Target:  5'- gAGGCCGAGACGGGCGcgcaGCuCGUCgUCGGu -3'
miRNA:   3'- aUUUGGCUCUGUCUGU----UG-GCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 12559 0.67 0.746761
Target:  5'- --uGCCGGGGuggcccgcCAGAUccauGCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCU--------GUCUGu---UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 14175 0.67 0.753905
Target:  5'- --cGCCGGGcgGguGGCAACCGCUcacccccgagcaggCCGGg -3'
miRNA:   3'- auuUGGCUC--UguCUGUUGGCGG--------------GGCC- -5'
23219 3' -54.7 NC_005259.1 + 14245 0.67 0.776943
Target:  5'- cGGGCCG-GGCAacGACGACCGugucgucaCCCCGu -3'
miRNA:   3'- aUUUGGCuCUGU--CUGUUGGC--------GGGGCc -5'
23219 3' -54.7 NC_005259.1 + 16623 0.72 0.452266
Target:  5'- cGGGCCGAGGCAGGCcACCuacggcgacGCCgCCGa -3'
miRNA:   3'- aUUUGGCUCUGUCUGuUGG---------CGG-GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.