miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 18270 0.66 0.823301
Target:  5'- cUGAACCuGAGACGaccucgacgcccGACgAGCCGCcguucugCCCGGu -3'
miRNA:   3'- -AUUUGG-CUCUGU------------CUG-UUGGCG-------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 19656 0.68 0.715565
Target:  5'- --cACCGccuCGGGCAGCCGCuacaucCCCGGu -3'
miRNA:   3'- auuUGGCucuGUCUGUUGGCG------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 20455 0.7 0.564974
Target:  5'- cGAGCCGGGGuggcuCGGAUGACCGCCgUCGa -3'
miRNA:   3'- aUUUGGCUCU-----GUCUGUUGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 21386 0.66 0.796355
Target:  5'- --cGCCGAGGCGGuGCAACgCGCaugggacgCCCGu -3'
miRNA:   3'- auuUGGCUCUGUC-UGUUG-GCG--------GGGCc -5'
23219 3' -54.7 NC_005259.1 + 21709 0.76 0.29103
Target:  5'- ----aCGGGuCAGACGACCGCCCUGc -3'
miRNA:   3'- auuugGCUCuGUCUGUUGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 24115 0.68 0.704992
Target:  5'- gGGACCGGGcGgGGACuacACCGCCgCCGc -3'
miRNA:   3'- aUUUGGCUC-UgUCUGu--UGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 26108 0.77 0.244104
Target:  5'- ---cCCGAG-CAGACcGCCGCCgCCGGu -3'
miRNA:   3'- auuuGGCUCuGUCUGuUGGCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 26327 0.67 0.756949
Target:  5'- ---cUCGGGgucgcACAGAUAGCaCGCCCuCGGg -3'
miRNA:   3'- auuuGGCUC-----UGUCUGUUG-GCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 27475 0.7 0.575666
Target:  5'- gGGGCCGGGGuCGGugugGCcACCGCCCCa- -3'
miRNA:   3'- aUUUGGCUCU-GUC----UGuUGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 29187 0.66 0.796355
Target:  5'- cGAACCcguGGGGCGGAUggUuCGCCCCc- -3'
miRNA:   3'- aUUUGG---CUCUGUCUGuuG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 31236 0.68 0.704992
Target:  5'- gAGACCauuGGGCGcGGCGguGCCGCCCCa- -3'
miRNA:   3'- aUUUGGc--UCUGU-CUGU--UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 32526 0.75 0.326333
Target:  5'- gAGGCgGGcGGCAGGCuugaccuugcuguuGGCCGCCCCGGc -3'
miRNA:   3'- aUUUGgCU-CUGUCUG--------------UUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 33986 0.7 0.554335
Target:  5'- cUGAGCCGGGuauGCGGugAGCUGCaaCCGGc -3'
miRNA:   3'- -AUUUGGCUC---UGUCugUUGGCGg-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 34273 0.68 0.726058
Target:  5'- -cAGCCG-GAUcgaugAGugGAUCGCCCuCGGg -3'
miRNA:   3'- auUUGGCuCUG-----UCugUUGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 34539 0.69 0.662117
Target:  5'- --cACCGAGGCAGccuCAGCUuGCCgUCGGg -3'
miRNA:   3'- auuUGGCUCUGUCu--GUUGG-CGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 34881 0.68 0.68365
Target:  5'- cGGACCGGGGugccuCGGGCAggacggGCCGCUCgGGc -3'
miRNA:   3'- aUUUGGCUCU-----GUCUGU------UGGCGGGgCC- -5'
23219 3' -54.7 NC_005259.1 + 37307 0.73 0.433072
Target:  5'- --cGCCGGGucaGCAGACAGCgCGUCCCa- -3'
miRNA:   3'- auuUGGCUC---UGUCUGUUG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 40665 0.69 0.651305
Target:  5'- --cGCCGAG-CAGcGCGAgCGCCuuGGu -3'
miRNA:   3'- auuUGGCUCuGUC-UGUUgGCGGggCC- -5'
23219 3' -54.7 NC_005259.1 + 44459 0.73 0.396155
Target:  5'- gAGACCGGGGau-GCcGCCGCCCUGGc -3'
miRNA:   3'- aUUUGGCUCUgucUGuUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 44551 0.74 0.387248
Target:  5'- --uGCCGAGaccgGCAGGCAGCgCGCCgaCCGGc -3'
miRNA:   3'- auuUGGCUC----UGUCUGUUG-GCGG--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.