miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 49991 0.67 0.776943
Target:  5'- cGGAUCGcGuGCGGACGGCUGCCCuCGu -3'
miRNA:   3'- aUUUGGCuC-UGUCUGUUGGCGGG-GCc -5'
23219 3' -54.7 NC_005259.1 + 48636 0.66 0.786727
Target:  5'- --cGCCGAGACGGGCugccaGAUCGUCgCCa- -3'
miRNA:   3'- auuUGGCUCUGUCUG-----UUGGCGG-GGcc -5'
23219 3' -54.7 NC_005259.1 + 47491 0.66 0.7954
Target:  5'- --cACCGAGGCGcGGCAggaacacGCUGCCCUc- -3'
miRNA:   3'- auuUGGCUCUGU-CUGU-------UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 29187 0.66 0.796355
Target:  5'- cGAACCcguGGGGCGGAUggUuCGCCCCc- -3'
miRNA:   3'- aUUUGG---CUCUGUCUGuuG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 4221 0.66 0.796355
Target:  5'- gAGAUCGAG-CAGGCcaAGCagGCCCCGc -3'
miRNA:   3'- aUUUGGCUCuGUCUG--UUGg-CGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 21386 0.66 0.796355
Target:  5'- --cGCCGAGGCGGuGCAACgCGCaugggacgCCCGu -3'
miRNA:   3'- auuUGGCUCUGUC-UGUUG-GCG--------GGGCc -5'
23219 3' -54.7 NC_005259.1 + 46909 0.66 0.805817
Target:  5'- --cGCCGAG-CAGuccGCGugCGCCgCCGa -3'
miRNA:   3'- auuUGGCUCuGUC---UGUugGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 63658 0.66 0.815103
Target:  5'- -uGGCCGGGACgccGGACAccucgggcaccGgCGCgCCGGg -3'
miRNA:   3'- auUUGGCUCUG---UCUGU-----------UgGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 18270 0.66 0.823301
Target:  5'- cUGAACCuGAGACGaccucgacgcccGACgAGCCGCcguucugCCCGGu -3'
miRNA:   3'- -AUUUGG-CUCUGU------------CUG-UUGGCG-------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 1910 0.66 0.824203
Target:  5'- --uGCCGAGGaAGcGC-GCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCUgUC-UGuUGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 47941 0.66 0.824203
Target:  5'- gAAGCCGAuGACGgcggugccGAUGGCCGCCgCGc -3'
miRNA:   3'- aUUUGGCU-CUGU--------CUGUUGGCGGgGCc -5'
23219 3' -54.7 NC_005259.1 + 8283 0.65 0.832225
Target:  5'- --uACCGGGugcGCGGGCAcccgcacggaaacGCCGCCUuguCGGa -3'
miRNA:   3'- auuUGGCUC---UGUCUGU-------------UGGCGGG---GCC- -5'
23219 3' -54.7 NC_005259.1 + 1126 0.72 0.471915
Target:  5'- -cAGgCGGGACAGAC--CCGCCCCa- -3'
miRNA:   3'- auUUgGCUCUGUCUGuuGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 48118 0.77 0.243482
Target:  5'- gAAACCGAGcACAccgccucGACcaccGCCGCCCCGGc -3'
miRNA:   3'- aUUUGGCUC-UGU-------CUGu---UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 26108 0.77 0.244104
Target:  5'- ---cCCGAG-CAGACcGCCGCCgCCGGu -3'
miRNA:   3'- auuuGGCUCuGUCUGuUGGCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 47281 0.76 0.27694
Target:  5'- --cACCGAG-CAGACcGCCGUCgCCGGa -3'
miRNA:   3'- auuUGGCUCuGUCUGuUGGCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 52268 0.76 0.27694
Target:  5'- gGGGCCG-GGCAGACAggACCGgCCCGa -3'
miRNA:   3'- aUUUGGCuCUGUCUGU--UGGCgGGGCc -5'
23219 3' -54.7 NC_005259.1 + 21709 0.76 0.29103
Target:  5'- ----aCGGGuCAGACGACCGCCCUGc -3'
miRNA:   3'- auuugGCUCuGUCUGUUGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 7850 0.75 0.305676
Target:  5'- ----aCGGGACGGACcgcGCCGaCCCCGGu -3'
miRNA:   3'- auuugGCUCUGUCUGu--UGGC-GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 32526 0.75 0.326333
Target:  5'- gAGGCgGGcGGCAGGCuugaccuugcuguuGGCCGCCCCGGc -3'
miRNA:   3'- aUUUGgCU-CUGUCUG--------------UUGGCGGGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.