miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 8957 0.74 0.387248
Target:  5'- --cGCCGuGGACGGGC-ACCGUgCCGGg -3'
miRNA:   3'- auuUGGC-UCUGUCUGuUGGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 8283 0.65 0.832225
Target:  5'- --uACCGGGugcGCGGGCAcccgcacggaaacGCCGCCUuguCGGa -3'
miRNA:   3'- auuUGGCUC---UGUCUGU-------------UGGCGGG---GCC- -5'
23219 3' -54.7 NC_005259.1 + 47081 0.71 0.542701
Target:  5'- --cGCCGAGACgauGGGCAGCacgaucuCGCCCCa- -3'
miRNA:   3'- auuUGGCUCUG---UCUGUUG-------GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 67734 0.71 0.50217
Target:  5'- cGAuCCGAuaccGGCGGcCAcuagGCCGCCCCGGc -3'
miRNA:   3'- aUUuGGCU----CUGUCuGU----UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 11312 0.71 0.50217
Target:  5'- gAGGCCGAGACGGGCGcgcaGCuCGUCgUCGGu -3'
miRNA:   3'- aUUUGGCUCUGUCUGU----UG-GCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 1126 0.72 0.471915
Target:  5'- -cAGgCGGGACAGAC--CCGCCCCa- -3'
miRNA:   3'- auUUgGCUCUGUCUGuuGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 16623 0.72 0.452266
Target:  5'- cGGGCCGAGGCAGGCcACCuacggcgacGCCgCCGa -3'
miRNA:   3'- aUUUGGCUCUGUCUGuUGG---------CGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 37307 0.73 0.433072
Target:  5'- --cGCCGGGucaGCAGACAGCgCGUCCCa- -3'
miRNA:   3'- auuUGGCUC---UGUCUGUUG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 60534 0.73 0.405194
Target:  5'- cGGGCCGGGAC--GCAGCCGCucgucggcaugCCCGGu -3'
miRNA:   3'- aUUUGGCUCUGucUGUUGGCG-----------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 52151 0.73 0.396155
Target:  5'- --cGCCGAGGCAGGCAG-CGCCgaGGc -3'
miRNA:   3'- auuUGGCUCUGUCUGUUgGCGGggCC- -5'
23219 3' -54.7 NC_005259.1 + 44459 0.73 0.396155
Target:  5'- gAGACCGGGGau-GCcGCCGCCCUGGc -3'
miRNA:   3'- aUUUGGCUCUgucUGuUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 53373 0.92 0.024683
Target:  5'- cUAAACCGAGACAGcaAACCGCCCCGGc -3'
miRNA:   3'- -AUUUGGCUCUGUCugUUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 44551 0.74 0.387248
Target:  5'- --uGCCGAGaccgGCAGGCAGCgCGCCgaCCGGc -3'
miRNA:   3'- auuUGGCUC----UGUCUGUUG-GCGG--GGCC- -5'
23219 3' -54.7 NC_005259.1 + 45738 0.74 0.369833
Target:  5'- --cACCGAGGCc-GCGcACCGCCUCGGg -3'
miRNA:   3'- auuUGGCUCUGucUGU-UGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 32526 0.75 0.326333
Target:  5'- gAGGCgGGcGGCAGGCuugaccuugcuguuGGCCGCCCCGGc -3'
miRNA:   3'- aUUUGgCU-CUGUCUG--------------UUGGCGGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 7850 0.75 0.305676
Target:  5'- ----aCGGGACGGACcgcGCCGaCCCCGGu -3'
miRNA:   3'- auuugGCUCUGUCUGu--UGGC-GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 21709 0.76 0.29103
Target:  5'- ----aCGGGuCAGACGACCGCCCUGc -3'
miRNA:   3'- auuugGCUCuGUCUGUUGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 52268 0.76 0.27694
Target:  5'- gGGGCCG-GGCAGACAggACCGgCCCGa -3'
miRNA:   3'- aUUUGGCuCUGUCUGU--UGGCgGGGCc -5'
23219 3' -54.7 NC_005259.1 + 47281 0.76 0.27694
Target:  5'- --cACCGAG-CAGACcGCCGUCgCCGGa -3'
miRNA:   3'- auuUGGCUCuGUCUGuUGGCGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 26108 0.77 0.244104
Target:  5'- ---cCCGAG-CAGACcGCCGCCgCCGGu -3'
miRNA:   3'- auuuGGCUCuGUCUGuUGGCGG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.