Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 36444 | 0.68 | 0.344105 |
Target: 5'- cGCCGAGGUCGA-C-CGCgucgagggugagCACCGCC-Ca -3' miRNA: 3'- -CGGCUCCGGCUaGaGCG------------GUGGCGGcG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 3857 | 0.68 | 0.344105 |
Target: 5'- cGUCGAcGCCGGUCgagCGCCucgagcccACC-CCGCa -3' miRNA: 3'- -CGGCUcCGGCUAGa--GCGG--------UGGcGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 11523 | 0.68 | 0.344105 |
Target: 5'- cUCGGcGGCagCGAUCUUgaGCCGuuGCCGCa -3' miRNA: 3'- cGGCU-CCG--GCUAGAG--CGGUggCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 65100 | 0.69 | 0.336431 |
Target: 5'- gGCuCGuGGCaCGGUCagugCGUCACCGUCGg -3' miRNA: 3'- -CG-GCuCCG-GCUAGa---GCGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 3074 | 0.69 | 0.336431 |
Target: 5'- gGCCGAGGCCGAcaagagaGCCG-CGCaGCg -3' miRNA: 3'- -CGGCUCCGGCUagag---CGGUgGCGgCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 20267 | 0.69 | 0.336431 |
Target: 5'- cGCCG-GGCCGAuggaUCguggacgCGCUACCGCgaGUu -3' miRNA: 3'- -CGGCuCCGGCU----AGa------GCGGUGGCGg-CG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 27260 | 0.69 | 0.336431 |
Target: 5'- cCCGcguAGGaCCGAUacgcCGCCuugaGCCGCCGCu -3' miRNA: 3'- cGGC---UCC-GGCUAga--GCGG----UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 17328 | 0.69 | 0.336431 |
Target: 5'- cCCGAGgguguGCCGGUCaaCGUCGCCGUCGa -3' miRNA: 3'- cGGCUC-----CGGCUAGa-GCGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 18326 | 0.69 | 0.328883 |
Target: 5'- aCCGAGGCCGGUgcgUUCGUggucgaCGCCGaCgGCg -3' miRNA: 3'- cGGCUCCGGCUA---GAGCG------GUGGC-GgCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 38641 | 0.69 | 0.328883 |
Target: 5'- cGCCGAGuuggcgaacucGCCGAaaUCGaCCACCucgcuguugGCCGCc -3' miRNA: 3'- -CGGCUC-----------CGGCUagAGC-GGUGG---------CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 47475 | 0.69 | 0.328883 |
Target: 5'- aCCGAGGU-GAUCgCGUCACCGaggCGCg -3' miRNA: 3'- cGGCUCCGgCUAGaGCGGUGGCg--GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 65464 | 0.69 | 0.328883 |
Target: 5'- -aCGAGGCCGAcuccgcgugUCUgGCUGCCauagGCUGCc -3' miRNA: 3'- cgGCUCCGGCU---------AGAgCGGUGG----CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 15761 | 0.69 | 0.319259 |
Target: 5'- gGCCGGGGaggaucucuauggaCCGAUCaUGCUgGCCGCCGg -3' miRNA: 3'- -CGGCUCC--------------GGCUAGaGCGG-UGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 7570 | 0.69 | 0.314165 |
Target: 5'- cGCCa---CCGuUCgCGCCGCCGCCGCc -3' miRNA: 3'- -CGGcuccGGCuAGaGCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 26914 | 0.69 | 0.314165 |
Target: 5'- gGCCGGGuuucuugcccucGUgGAUCUCGgcauaCGCCGCUGCu -3' miRNA: 3'- -CGGCUC------------CGgCUAGAGCg----GUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 48600 | 0.69 | 0.306995 |
Target: 5'- uGUCGAGcGCgGg---CGCUACCGCCGUg -3' miRNA: 3'- -CGGCUC-CGgCuagaGCGGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 15161 | 0.69 | 0.306995 |
Target: 5'- gGCCGAGGCCGAg---GCCAuccUCGacaCGCa -3' miRNA: 3'- -CGGCUCCGGCUagagCGGU---GGCg--GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 20662 | 0.69 | 0.29995 |
Target: 5'- aCCGGGGCCGAggaCGCCAugaugUgGUCGCa -3' miRNA: 3'- cGGCUCCGGCUagaGCGGU-----GgCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 26146 | 0.69 | 0.29995 |
Target: 5'- cGCCGAGGCCGAgca-GCCcgaaaaUGcCCGCg -3' miRNA: 3'- -CGGCUCCGGCUagagCGGug----GC-GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 5906 | 0.69 | 0.29995 |
Target: 5'- cGUCGAGGUCGAggugCU-GCgCACCGUCGa -3' miRNA: 3'- -CGGCUCCGGCUa---GAgCG-GUGGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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