miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 17378 0.68 0.392746
Target:  5'- gGUCGuGGUCGA-CUgCGaCACUGCCGCc -3'
miRNA:   3'- -CGGCuCCGGCUaGA-GCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11022 0.68 0.392746
Target:  5'- cGCCGAGGCagGAgUUCGCCGgguggUCaCCGCa -3'
miRNA:   3'- -CGGCUCCGg-CUaGAGCGGU-----GGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 2128 0.68 0.39021
Target:  5'- cGCCGAGGUcacgcagacccgcaCGGUgCUgGCCagcggcgucgaGCCGCCGg -3'
miRNA:   3'- -CGGCUCCG--------------GCUA-GAgCGG-----------UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 36177 0.68 0.384335
Target:  5'- uGCCGAGGUCGAga--GCCugCGUacugaUGCc -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGugGCG-----GCG- -5'
23220 5' -61.6 NC_005259.1 + 6240 0.68 0.384335
Target:  5'- aCCGugggcgaguGGGUCGAuaUCcCGCacCGCCGCCGCg -3'
miRNA:   3'- cGGC---------UCCGGCU--AGaGCG--GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 47081 0.68 0.384335
Target:  5'- cGCCGAGacgaugggcaGCaCGAUCUCGCCccacgucuggaaACCGgCGa -3'
miRNA:   3'- -CGGCUC----------CG-GCUAGAGCGG------------UGGCgGCg -5'
23220 5' -61.6 NC_005259.1 + 63587 0.68 0.3835
Target:  5'- cGCCGccuGGCUGuUCUCguccuccauggcgGCCACCGaCGCc -3'
miRNA:   3'- -CGGCu--CCGGCuAGAG-------------CGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 19305 0.68 0.376043
Target:  5'- cGCCGAGGCacuCGAggaaGCCAUCG-CGCu -3'
miRNA:   3'- -CGGCUCCG---GCUagagCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 25168 0.68 0.376043
Target:  5'- cCCGuuGGGuCCGAccCguaCGCCGCCGCCGa -3'
miRNA:   3'- cGGC--UCC-GGCUa-Ga--GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 10665 0.68 0.367874
Target:  5'- cGCCuuGAGGauGGUCUgCGCCGCCucuuugucGCCGUu -3'
miRNA:   3'- -CGG--CUCCggCUAGA-GCGGUGG--------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 23490 0.68 0.360626
Target:  5'- uGCCGAcgccaugaccaaGGCCGAgcucagcgacgagaUCUCGacggugaaaaucaGCCGCCGCc -3'
miRNA:   3'- -CGGCU------------CCGGCU--------------AGAGCgg-----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 52344 0.68 0.359827
Target:  5'- cGCCGGuGuGCCGcuguucGUCUC-CCAUCGCCGa -3'
miRNA:   3'- -CGGCU-C-CGGC------UAGAGcGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 22558 0.68 0.359827
Target:  5'- cGCCGAGGUCauggaagC-CGCCACCGaguaCGUg -3'
miRNA:   3'- -CGGCUCCGGcua----GaGCGGUGGCg---GCG- -5'
23220 5' -61.6 NC_005259.1 + 28005 0.68 0.359827
Target:  5'- uGCCGGGGCgGGg-UCGCCGgggUUGCgCGCg -3'
miRNA:   3'- -CGGCUCCGgCUagAGCGGU---GGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 61843 0.68 0.359827
Target:  5'- uGCCaGGGgUGAgcacCUCgGCCACCGCCucGCg -3'
miRNA:   3'- -CGGcUCCgGCUa---GAG-CGGUGGCGG--CG- -5'
23220 5' -61.6 NC_005259.1 + 52922 0.68 0.359827
Target:  5'- cGCCGAcucgauGGCCuGGUCgcucaaCGCCcguaagcacCCGCCGCu -3'
miRNA:   3'- -CGGCU------CCGG-CUAGa-----GCGGu--------GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42977 0.68 0.359827
Target:  5'- uGCCGGGGaUC-AUCgUUGCCGCC-CCGCc -3'
miRNA:   3'- -CGGCUCC-GGcUAG-AGCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37563 0.68 0.351904
Target:  5'- uCCGAuGUCGAcugCUCGCCGCCcgcGCCGa -3'
miRNA:   3'- cGGCUcCGGCUa--GAGCGGUGG---CGGCg -5'
23220 5' -61.6 NC_005259.1 + 68432 0.68 0.351904
Target:  5'- cGCgCG-GGCCGGuugauguaguUCUCgaccagcuugGUCACCGCCGUg -3'
miRNA:   3'- -CG-GCuCCGGCU----------AGAG----------CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 18550 0.68 0.344105
Target:  5'- cGCCGAcgaaccaucGCCGua--CGCCGCCGCCGa -3'
miRNA:   3'- -CGGCUc--------CGGCuagaGCGGUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.