miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 46055 0.67 0.436546
Target:  5'- aGCCGAuGGCCuuGAgcugCUCaagCACCGCCGg -3'
miRNA:   3'- -CGGCU-CCGG--CUa---GAGcg-GUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 21647 0.67 0.436546
Target:  5'- cGCCGAGGC---UCUCGCgGagaUGCCGa -3'
miRNA:   3'- -CGGCUCCGgcuAGAGCGgUg--GCGGCg -5'
23220 5' -61.6 NC_005259.1 + 9494 0.67 0.436546
Target:  5'- aUCGAGGCgaggaacgUGcgCUCGUCgcgcgcgucgACCGCCGCc -3'
miRNA:   3'- cGGCUCCG--------GCuaGAGCGG----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 44752 0.67 0.436546
Target:  5'- cGCCGAGGC---UCUUGagCACCGaucCCGCa -3'
miRNA:   3'- -CGGCUCCGgcuAGAGCg-GUGGC---GGCG- -5'
23220 5' -61.6 NC_005259.1 + 21577 0.67 0.427561
Target:  5'- -gCGAGGUCGAUUggccaugCGaCACCGCCa- -3'
miRNA:   3'- cgGCUCCGGCUAGa------GCgGUGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 44273 0.67 0.427561
Target:  5'- aUCGAGGCCGAacgcCUUgGCCAgCGCgaGCg -3'
miRNA:   3'- cGGCUCCGGCUa---GAG-CGGUgGCGg-CG- -5'
23220 5' -61.6 NC_005259.1 + 28640 0.67 0.418686
Target:  5'- aCCGGuGCCGAcacCGCCgagGCCGCCGUc -3'
miRNA:   3'- cGGCUcCGGCUagaGCGG---UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 28525 0.67 0.418686
Target:  5'- cGCCGAGGaaggauucaaGAUCaUgGCCACC-CCGUu -3'
miRNA:   3'- -CGGCUCCgg--------CUAG-AgCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 60531 0.67 0.418686
Target:  5'- gGCCG-GGCCGGga-CGCaGCCGCuCGUc -3'
miRNA:   3'- -CGGCuCCGGCUagaGCGgUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 19871 0.67 0.418686
Target:  5'- cGCCc--GCCGGgaUCGCCGaCGCCGCg -3'
miRNA:   3'- -CGGcucCGGCUagAGCGGUgGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 12294 0.67 0.409923
Target:  5'- cGCCGcgccucgaugcGGGCaauGUCggUGCgCACCGCCGCc -3'
miRNA:   3'- -CGGC-----------UCCGgc-UAGa-GCG-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 60356 0.67 0.409923
Target:  5'- gGUCGAGGCCcugcccgaaAUCcCGCCAaUCGCCGg -3'
miRNA:   3'- -CGGCUCCGGc--------UAGaGCGGU-GGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 28738 0.67 0.409923
Target:  5'- gGCCGAGGguuacgcgcCCGAgcgugagaUCGUCGCCGgUGCc -3'
miRNA:   3'- -CGGCUCC---------GGCUag------AGCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 31712 0.67 0.409053
Target:  5'- aCCGAuGCCGGUCUucucugaggugacCGCgC-CUGCCGCg -3'
miRNA:   3'- cGGCUcCGGCUAGA-------------GCG-GuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 44626 0.67 0.401276
Target:  5'- cGCCGuAGGuuGcgcCUUGaCCgguGCCGCCGCc -3'
miRNA:   3'- -CGGC-UCCggCua-GAGC-GG---UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 36139 0.67 0.401276
Target:  5'- cGCCG-GGCUG-UCcgUCGCCAUgGCCa- -3'
miRNA:   3'- -CGGCuCCGGCuAG--AGCGGUGgCGGcg -5'
23220 5' -61.6 NC_005259.1 + 5723 0.67 0.401276
Target:  5'- cGCCGGacggcGGCCauUCUCGCgGCCaaGCgGCg -3'
miRNA:   3'- -CGGCU-----CCGGcuAGAGCGgUGG--CGgCG- -5'
23220 5' -61.6 NC_005259.1 + 22615 0.67 0.401276
Target:  5'- cGCCGAccgccGcCCGAUCaucuUCGCCGCgucggucgaCGCCGCc -3'
miRNA:   3'- -CGGCUc----C-GGCUAG----AGCGGUG---------GCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 18837 0.67 0.401276
Target:  5'- uGCCcGGuGagGGUCUCGCCGgUGCCGUg -3'
miRNA:   3'- -CGGcUC-CggCUAGAGCGGUgGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 58566 0.67 0.401276
Target:  5'- gGCgGuuGGGCCgGAUCgcggCGCgGCUGCCGg -3'
miRNA:   3'- -CGgC--UCCGG-CUAGa---GCGgUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.