miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 14668 0.66 0.491649
Target:  5'- cCCGAcucgGGCCGcGUgcacucgauucugCUCGaCCcCCGCCGCg -3'
miRNA:   3'- cGGCU----CCGGC-UA-------------GAGC-GGuGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 14866 0.7 0.286238
Target:  5'- -gCGAGGuUCGcgCUgcccgaGCCGCCGCCGUa -3'
miRNA:   3'- cgGCUCC-GGCuaGAg-----CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 15161 0.69 0.306995
Target:  5'- gGCCGAGGCCGAg---GCCAuccUCGacaCGCa -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGU---GGCg--GCG- -5'
23220 5' -61.6 NC_005259.1 + 15278 0.66 0.464137
Target:  5'- cGCCGAcGaGCaagCGAUCUacacCGCCGaccUCGCCGCc -3'
miRNA:   3'- -CGGCU-C-CG---GCUAGA----GCGGU---GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 15344 0.67 0.436546
Target:  5'- --aGGGGCCaagcugguccaGuAUCUCGCCgaucugggcgaGCUGCCGCa -3'
miRNA:   3'- cggCUCCGG-----------C-UAGAGCGG-----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 15761 0.69 0.319259
Target:  5'- gGCCGGGGaggaucucuauggaCCGAUCaUGCUgGCCGCCGg -3'
miRNA:   3'- -CGGCUCC--------------GGCUAGaGCGG-UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 15837 0.66 0.502281
Target:  5'- aGCuCGAuguacGGCuCGGgcaUCGCCAagcUCGCCGCu -3'
miRNA:   3'- -CG-GCU-----CCG-GCUag-AGCGGU---GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 16180 0.7 0.286238
Target:  5'- cGCCGAGGUCcaagaGAUCaUGuCCACC-CCGCc -3'
miRNA:   3'- -CGGCUCCGG-----CUAGaGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 16622 0.66 0.492611
Target:  5'- -aCG-GGCCGAggCagGCCACCuacggcgacGCCGCc -3'
miRNA:   3'- cgGCuCCGGCUa-GagCGGUGG---------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 17328 0.69 0.336431
Target:  5'- cCCGAGgguguGCCGGUCaaCGUCGCCGUCGa -3'
miRNA:   3'- cGGCUC-----CGGCUAGa-GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 17378 0.68 0.392746
Target:  5'- gGUCGuGGUCGA-CUgCGaCACUGCCGCc -3'
miRNA:   3'- -CGGCuCCGGCUaGA-GCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 17772 0.66 0.492611
Target:  5'- cGCCG-GGCCGAg--CGC-ACCGagcgugcgcaCCGCg -3'
miRNA:   3'- -CGGCuCCGGCUagaGCGgUGGC----------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 17846 0.66 0.499371
Target:  5'- gGCCGAGGCCaccccguggucagcGAUCcuugaGCCGCuCGguuggacccCCGCa -3'
miRNA:   3'- -CGGCUCCGG--------------CUAGag---CGGUG-GC---------GGCG- -5'
23220 5' -61.6 NC_005259.1 + 18326 0.69 0.328883
Target:  5'- aCCGAGGCCGGUgcgUUCGUggucgaCGCCGaCgGCg -3'
miRNA:   3'- cGGCUCCGGCUA---GAGCG------GUGGC-GgCG- -5'
23220 5' -61.6 NC_005259.1 + 18409 0.74 0.146557
Target:  5'- cGCCGAGcCCGcgCcCGCCACCuaCGCg -3'
miRNA:   3'- -CGGCUCcGGCuaGaGCGGUGGcgGCG- -5'
23220 5' -61.6 NC_005259.1 + 18550 0.68 0.344105
Target:  5'- cGCCGAcgaaccaucGCCGua--CGCCGCCGCCGa -3'
miRNA:   3'- -CGGCUc--------CGGCuagaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 18837 0.67 0.401276
Target:  5'- uGCCcGGuGagGGUCUCGCCGgUGCCGUg -3'
miRNA:   3'- -CGGcUC-CggCUAGAGCGGUgGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 19305 0.68 0.376043
Target:  5'- cGCCGAGGCacuCGAggaaGCCAUCG-CGCu -3'
miRNA:   3'- -CGGCUCCG---GCUagagCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 19447 0.73 0.179803
Target:  5'- cCCGAGGCUGucaUCGagACCGCCGUg -3'
miRNA:   3'- cGGCUCCGGCuagAGCggUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 19871 0.67 0.418686
Target:  5'- cGCCc--GCCGGgaUCGCCGaCGCCGCg -3'
miRNA:   3'- -CGGcucCGGCUagAGCGGUgGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.