miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 6937 0.84 0.029162
Target:  5'- cGCCuuGAGGCCGAgCUCGCCGCCGaCgGCa -3'
miRNA:   3'- -CGG--CUCCGGCUaGAGCGGUGGC-GgCG- -5'
23220 5' -61.6 NC_005259.1 + 7570 0.69 0.314165
Target:  5'- cGCCa---CCGuUCgCGCCGCCGCCGCc -3'
miRNA:   3'- -CGGcuccGGCuAGaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 7640 0.71 0.225037
Target:  5'- aCCGucGCCGAgUUCGaCCGCCGUCGUc -3'
miRNA:   3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 8329 0.7 0.279569
Target:  5'- uGCCGAcggcgaucaGCCGGUCaCGCUGCUGCCGg -3'
miRNA:   3'- -CGGCUc--------CGGCUAGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 8753 0.72 0.219569
Target:  5'- cGUCGAGGUCGAggccCUUgGCCAgCGCgGCg -3'
miRNA:   3'- -CGGCUCCGGCUa---GAG-CGGUgGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 8821 0.71 0.238633
Target:  5'- cGCCG-GGCCGGUgaguugacgcgCUgCGCCGaccaccacagcgugcCCGCCGCc -3'
miRNA:   3'- -CGGCuCCGGCUA-----------GA-GCGGU---------------GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 9206 0.72 0.208974
Target:  5'- -aCGGGGCCGGa-UCGagCACCGCUGCg -3'
miRNA:   3'- cgGCUCCGGCUagAGCg-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 9494 0.67 0.436546
Target:  5'- aUCGAGGCgaggaacgUGcgCUCGUCgcgcgcgucgACCGCCGCc -3'
miRNA:   3'- cGGCUCCG--------GCuaGAGCGG----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 9998 0.71 0.23062
Target:  5'- aGCCGGGGacugauccgcgUCGAUCUCGCCcuuACCGaCCa- -3'
miRNA:   3'- -CGGCUCC-----------GGCUAGAGCGG---UGGC-GGcg -5'
23220 5' -61.6 NC_005259.1 + 10631 0.67 0.445639
Target:  5'- cGUCGAGGCCGAacagCUUGgCC-UCGCgGUc -3'
miRNA:   3'- -CGGCUCCGGCUa---GAGC-GGuGGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 10665 0.68 0.367874
Target:  5'- cGCCuuGAGGauGGUCUgCGCCGCCucuuugucGCCGUu -3'
miRNA:   3'- -CGG--CUCCggCUAGA-GCGGUGG--------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11022 0.68 0.392746
Target:  5'- cGCCGAGGCagGAgUUCGCCGgguggUCaCCGCa -3'
miRNA:   3'- -CGGCUCCGg-CUaGAGCGGU-----GGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11439 0.75 0.132122
Target:  5'- uGCUuGGGCCG--CUCGCUGCCGCCGg -3'
miRNA:   3'- -CGGcUCCGGCuaGAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 11523 0.68 0.344105
Target:  5'- cUCGGcGGCagCGAUCUUgaGCCGuuGCCGCa -3'
miRNA:   3'- cGGCU-CCG--GCUAGAG--CGGUggCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11818 0.71 0.23062
Target:  5'- aGCuCGucGCUG-UCguacUGCCACCGCCGCa -3'
miRNA:   3'- -CG-GCucCGGCuAGa---GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11897 0.71 0.238633
Target:  5'- cGCCGAcagucucgcggauacGGuuGAgCUCGaaCACCGCCGCc -3'
miRNA:   3'- -CGGCU---------------CCggCUaGAGCg-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 12294 0.67 0.409923
Target:  5'- cGCCGcgccucgaugcGGGCaauGUCggUGCgCACCGCCGCc -3'
miRNA:   3'- -CGGC-----------UCCGgc-UAGa-GCG-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 13432 0.76 0.112914
Target:  5'- cGCCGGGGCCGcgCUaggCGUgACCGUCGg -3'
miRNA:   3'- -CGGCUCCGGCuaGA---GCGgUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 14299 0.72 0.193423
Target:  5'- aCCGAugucggugcguauGGCCGccCUCGaCGCCGCCGCc -3'
miRNA:   3'- cGGCU-------------CCGGCuaGAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 14371 0.66 0.502281
Target:  5'- uGUCuccGCUGAUCUCGUCACCGagcuCGCc -3'
miRNA:   3'- -CGGcucCGGCUAGAGCGGUGGCg---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.