miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 58692 0.83 0.036339
Target:  5'- -gCGGGGUCGG-CUCGUCGCCGCCGCc -3'
miRNA:   3'- cgGCUCCGGCUaGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 58566 0.67 0.401276
Target:  5'- gGCgGuuGGGCCgGAUCgcggCGCgGCUGCCGg -3'
miRNA:   3'- -CGgC--UCCGG-CUAGa---GCGgUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 56887 0.72 0.203843
Target:  5'- aGCCGAccGCCaAUCgcagCGUgGCCGCCGCa -3'
miRNA:   3'- -CGGCUc-CGGcUAGa---GCGgUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 56770 0.66 0.502281
Target:  5'- aUCGGGGaCCG--CUUGaCACCGCCGUu -3'
miRNA:   3'- cGGCUCC-GGCuaGAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 56307 0.71 0.242137
Target:  5'- -aCGuGGCCGGaccCUCGUCGCCGUCGa -3'
miRNA:   3'- cgGCuCCGGCUa--GAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 55905 0.7 0.293032
Target:  5'- cGCCGGGGUCG--CUgGCCagACCGCUGg -3'
miRNA:   3'- -CGGCUCCGGCuaGAgCGG--UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 55553 0.66 0.464137
Target:  5'- cGUCGAGgauGCCGAaagCGagcaggaacaUCACCGCCGCg -3'
miRNA:   3'- -CGGCUC---CGGCUagaGC----------GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 54735 0.73 0.184401
Target:  5'- aGCCGAGGCugccgacagCGAUCagGCCGCCGaCC-Ca -3'
miRNA:   3'- -CGGCUCCG---------GCUAGagCGGUGGC-GGcG- -5'
23220 5' -61.6 NC_005259.1 + 53250 0.7 0.286238
Target:  5'- cGCCGAcaCCG---UCGCCGCCGCUGUc -3'
miRNA:   3'- -CGGCUccGGCuagAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 53163 1.12 0.000248
Target:  5'- cGCCGAGGCCGAUCUCGCCACCGCCGCc -3'
miRNA:   3'- -CGGCUCCGGCUAGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 52922 0.68 0.359827
Target:  5'- cGCCGAcucgauGGCCuGGUCgcucaaCGCCcguaagcacCCGCCGCu -3'
miRNA:   3'- -CGGCU------CCGG-CUAGa-----GCGGu--------GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 52344 0.68 0.359827
Target:  5'- cGCCGGuGuGCCGcuguucGUCUC-CCAUCGCCGa -3'
miRNA:   3'- -CGGCU-C-CGGC------UAGAGcGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 51993 0.72 0.198326
Target:  5'- aCCGAcGCCGAUCUCGaccggaUgcacgagcgucagGCCGCCGCa -3'
miRNA:   3'- cGGCUcCGGCUAGAGCg-----G-------------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 51492 0.72 0.219569
Target:  5'- cGCCGGGGauaGGUCgaCGCCGCCGaucucgaCGCg -3'
miRNA:   3'- -CGGCUCCgg-CUAGa-GCGGUGGCg------GCG- -5'
23220 5' -61.6 NC_005259.1 + 50881 0.66 0.473535
Target:  5'- uGCCGAuGGUCgGAUCagGa-ACCGCUGCg -3'
miRNA:   3'- -CGGCU-CCGG-CUAGagCggUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 49230 0.66 0.454837
Target:  5'- cUCGucGUCGGaCUCGaCCGCUGCCGUc -3'
miRNA:   3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 48676 0.7 0.293032
Target:  5'- cCCGAGGCUGAUUUUGCCGacauCUGUCa- -3'
miRNA:   3'- cGGCUCCGGCUAGAGCGGU----GGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 48600 0.69 0.306995
Target:  5'- uGUCGAGcGCgGg---CGCUACCGCCGUg -3'
miRNA:   3'- -CGGCUC-CGgCuagaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 48521 0.71 0.23062
Target:  5'- uGCCGcacuGCCGAcuUCUCGgCGCUGUCGCc -3'
miRNA:   3'- -CGGCuc--CGGCU--AGAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 48436 0.66 0.464137
Target:  5'- aCCGAGGCgCGAggcagCggcagCGCguucCACCGCgCGCc -3'
miRNA:   3'- cGGCUCCG-GCUa----Ga----GCG----GUGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.