miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 68745 0.66 0.492611
Target:  5'- uGCCGAGcucgaccccGgCGAcCUCGCCAUCGgUGUa -3'
miRNA:   3'- -CGGCUC---------CgGCUaGAGCGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 68572 0.7 0.266604
Target:  5'- aCCGAGGUgGAcCUCguauccggcgGCCACCGCaGCg -3'
miRNA:   3'- cGGCUCCGgCUaGAG----------CGGUGGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 68432 0.68 0.351904
Target:  5'- cGCgCG-GGCCGGuugauguaguUCUCgaccagcuugGUCACCGCCGUg -3'
miRNA:   3'- -CG-GCuCCGGCU----------AGAG----------CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 67108 0.66 0.50131
Target:  5'- uCCGAGGUguacugcccgcugCGGUCgugCGUgagCACCGCUGUg -3'
miRNA:   3'- cGGCUCCG-------------GCUAGa--GCG---GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 67058 0.66 0.473535
Target:  5'- cCCGuGcGCCGAUCUCaaggGCCAgCGUgaCGCc -3'
miRNA:   3'- cGGCuC-CGGCUAGAG----CGGUgGCG--GCG- -5'
23220 5' -61.6 NC_005259.1 + 66020 0.66 0.477321
Target:  5'- cUCGGGGCCgcacguguugcgcgcGAgCUCGacguagaCGCCGCCGUg -3'
miRNA:   3'- cGGCUCCGG---------------CUaGAGCg------GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 65464 0.69 0.328883
Target:  5'- -aCGAGGCCGAcuccgcgugUCUgGCUGCCauagGCUGCc -3'
miRNA:   3'- cgGCUCCGGCU---------AGAgCGGUGG----CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 65100 0.69 0.336431
Target:  5'- gGCuCGuGGCaCGGUCagugCGUCACCGUCGg -3'
miRNA:   3'- -CG-GCuCCG-GCUAGa---GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 63659 0.66 0.464137
Target:  5'- gGCCGGGacGCCGGacacCUCgGgCACCGgCGCg -3'
miRNA:   3'- -CGGCUC--CGGCUa---GAG-CgGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 63587 0.68 0.3835
Target:  5'- cGCCGccuGGCUGuUCUCguccuccauggcgGCCACCGaCGCc -3'
miRNA:   3'- -CGGCu--CCGGCuAGAG-------------CGGUGGCgGCG- -5'
23220 5' -61.6 NC_005259.1 + 63182 0.73 0.179803
Target:  5'- cGCCGAGGugaucgcaccCCGGUCgugCGCCucgACCGCCu- -3'
miRNA:   3'- -CGGCUCC----------GGCUAGa--GCGG---UGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 63121 0.7 0.295784
Target:  5'- cGUCGAGgguggugaggucguaGCCGcuGUcCUCGCCcacguugagcaGCCGCCGCa -3'
miRNA:   3'- -CGGCUC---------------CGGC--UA-GAGCGG-----------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 62129 0.72 0.193909
Target:  5'- aCCGAGGUgauCG-UCUCGaCCACCucagGCCGCa -3'
miRNA:   3'- cGGCUCCG---GCuAGAGC-GGUGG----CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 61951 0.7 0.293032
Target:  5'- uGCCGGGGCCaccgcagccUCacgCGCCGCUGCCu- -3'
miRNA:   3'- -CGGCUCCGGcu-------AGa--GCGGUGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 61843 0.68 0.359827
Target:  5'- uGCCaGGGgUGAgcacCUCgGCCACCGCCucGCg -3'
miRNA:   3'- -CGGcUCCgGCUa---GAG-CGGUGGCGG--CG- -5'
23220 5' -61.6 NC_005259.1 + 60809 0.72 0.214746
Target:  5'- cCCGAGGCCGGaaaucgucggcgaugCUgGCCACCaUCGCg -3'
miRNA:   3'- cGGCUCCGGCUa--------------GAgCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 60531 0.67 0.418686
Target:  5'- gGCCG-GGCCGGga-CGCaGCCGCuCGUc -3'
miRNA:   3'- -CGGCuCCGGCUagaGCGgUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 60356 0.67 0.409923
Target:  5'- gGUCGAGGCCcugcccgaaAUCcCGCCAaUCGCCGg -3'
miRNA:   3'- -CGGCUCCGGc--------UAGaGCGGU-GGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 60200 0.71 0.23062
Target:  5'- aCCGGGccacgaucucGCCGAUCUCGUCGgCGCUGa -3'
miRNA:   3'- cGGCUC----------CGGCUAGAGCGGUgGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 58866 0.67 0.445639
Target:  5'- cGCCGucGUCGucgucgcCUCGgCAUCGCCGUc -3'
miRNA:   3'- -CGGCucCGGCua-----GAGCgGUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.