Results 1 - 20 of 187 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 44512 | 0.66 | 0.502281 |
Target: 5'- uGCCcuGGCCacccaCGCCGCCGCCcgGCa -3' miRNA: 3'- -CGGcuCCGGcuagaGCGGUGGCGG--CG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 45628 | 0.77 | 0.093815 |
Target: 5'- cGCCG-GGCCGggCagcgCGCCgguGCCGCCGUg -3' miRNA: 3'- -CGGCuCCGGCuaGa---GCGG---UGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 37195 | 0.76 | 0.107114 |
Target: 5'- aGCUGcGGCCcuugC-CGCCACCGCCGCc -3' miRNA: 3'- -CGGCuCCGGcua-GaGCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 13432 | 0.76 | 0.112914 |
Target: 5'- cGCCGGGGCCGcgCUaggCGUgACCGUCGg -3' miRNA: 3'- -CGGCUCCGGCuaGA---GCGgUGGCGGCg -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 45013 | 0.76 | 0.112914 |
Target: 5'- cGCCGGGGCCGcgC-CGCCcugcuucaugaGCUGCuCGCg -3' miRNA: 3'- -CGGCUCCGGCuaGaGCGG-----------UGGCG-GCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 22682 | 0.75 | 0.125406 |
Target: 5'- aCCGccGCCGAUUUCcCCGCCGUCGCc -3' miRNA: 3'- cGGCucCGGCUAGAGcGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 11439 | 0.75 | 0.132122 |
Target: 5'- uGCUuGGGCCG--CUCGCUGCCGCCGg -3' miRNA: 3'- -CGGcUCCGGCuaGAGCGGUGGCGGCg -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 6425 | 0.75 | 0.132122 |
Target: 5'- cCCGAccucGCCGAUgUCGgCACCGUCGCg -3' miRNA: 3'- cGGCUc---CGGCUAgAGCgGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 35479 | 0.75 | 0.134549 |
Target: 5'- cGCCcgguAGGCCGAacgaUCcuggguuggccccgUUGCCGCCGCCGCc -3' miRNA: 3'- -CGGc---UCCGGCU----AG--------------AGCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 45315 | 0.78 | 0.084318 |
Target: 5'- cGCCGAGGCCGccgCcgaacugcgUgGCCugCGCCGCc -3' miRNA: 3'- -CGGCUCCGGCua-G---------AgCGGugGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 45405 | 0.78 | 0.08209 |
Target: 5'- cGCCGAGcgcGCUGA--UgGCCGCCGCCGCu -3' miRNA: 3'- -CGGCUC---CGGCUagAgCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 46869 | 0.78 | 0.08209 |
Target: 5'- gGUCGAGGCUugaAUCgCGCCGCCGcCCGCg -3' miRNA: 3'- -CGGCUCCGGc--UAGaGCGGUGGC-GGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 1850 | 0.94 | 0.00493 |
Target: 5'- cGCCGAGGCCGAgaaaGCCGCCGCCGCg -3' miRNA: 3'- -CGGCUCCGGCUagagCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 6937 | 0.84 | 0.029162 |
Target: 5'- cGCCuuGAGGCCGAgCUCGCCGCCGaCgGCa -3' miRNA: 3'- -CGG--CUCCGGCUaGAGCGGUGGC-GgCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 27477 | 0.83 | 0.032557 |
Target: 5'- gGCCGGGGUCGGUgUgGCCACCGCCccacGCg -3' miRNA: 3'- -CGGCUCCGGCUAgAgCGGUGGCGG----CG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 58692 | 0.83 | 0.036339 |
Target: 5'- -gCGGGGUCGG-CUCGUCGCCGCCGCc -3' miRNA: 3'- cgGCUCCGGCUaGAGCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 6109 | 0.82 | 0.040552 |
Target: 5'- cGCCGAGGCCGAg---GCCGCCGCuaCGCg -3' miRNA: 3'- -CGGCUCCGGCUagagCGGUGGCG--GCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 36656 | 0.81 | 0.05046 |
Target: 5'- -gCGAGccGCCGccCUCGCCGCCGCCGCc -3' miRNA: 3'- cgGCUC--CGGCuaGAGCGGUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 32803 | 0.8 | 0.061032 |
Target: 5'- cCCGAGGUCGAUCcCGaCgCACCGCCGUc -3' miRNA: 3'- cGGCUCCGGCUAGaGC-G-GUGGCGGCG- -5' |
|||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 35540 | 0.79 | 0.068004 |
Target: 5'- cGCCGucGCCGAUCcgcccgaugacUUGCCGCCGaCCGCc -3' miRNA: 3'- -CGGCucCGGCUAG-----------AGCGGUGGC-GGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home