Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23220 | 5' | -61.6 | NC_005259.1 | + | 17772 | 0.66 | 0.492611 |
Target: 5'- cGCCG-GGCCGAg--CGC-ACCGagcgugcgcaCCGCg -3' miRNA: 3'- -CGGCuCCGGCUagaGCGgUGGC----------GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 16622 | 0.66 | 0.492611 |
Target: 5'- -aCG-GGCCGAggCagGCCACCuacggcgacGCCGCc -3' miRNA: 3'- cgGCuCCGGCUa-GagCGGUGG---------CGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 2944 | 0.66 | 0.473535 |
Target: 5'- uCCaAGGCgcgCGAgaccCUgGCCACCGCgCGCg -3' miRNA: 3'- cGGcUCCG---GCUa---GAgCGGUGGCG-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 68745 | 0.66 | 0.492611 |
Target: 5'- uGCCGAGcucgaccccGgCGAcCUCGCCAUCGgUGUa -3' miRNA: 3'- -CGGCUC---------CgGCUaGAGCGGUGGCgGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 20701 | 0.66 | 0.483027 |
Target: 5'- cGCuCGGuGGUCGAaggUUUCaCC-CCGCCGCg -3' miRNA: 3'- -CG-GCU-CCGGCU---AGAGcGGuGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 15278 | 0.66 | 0.464137 |
Target: 5'- cGCCGAcGaGCaagCGAUCUacacCGCCGaccUCGCCGCc -3' miRNA: 3'- -CGGCU-C-CG---GCUAGA----GCGGU---GGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 49230 | 0.66 | 0.454837 |
Target: 5'- cUCGucGUCGGaCUCGaCCGCUGCCGUc -3' miRNA: 3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 56770 | 0.66 | 0.502281 |
Target: 5'- aUCGGGGaCCG--CUUGaCACCGCCGUu -3' miRNA: 3'- cGGCUCC-GGCuaGAGCgGUGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 35861 | 0.66 | 0.502281 |
Target: 5'- uCCGccGCCGcGUCcaccgcaGCCGCCGCCGa -3' miRNA: 3'- cGGCucCGGC-UAGag-----CGGUGGCGGCg -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 31749 | 0.66 | 0.454837 |
Target: 5'- -nCGAGcGCUGGUgUCcCCACCGCCcCg -3' miRNA: 3'- cgGCUC-CGGCUAgAGcGGUGGCGGcG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 67058 | 0.66 | 0.473535 |
Target: 5'- cCCGuGcGCCGAUCUCaaggGCCAgCGUgaCGCc -3' miRNA: 3'- cGGCuC-CGGCUAGAG----CGGUgGCG--GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 17846 | 0.66 | 0.499371 |
Target: 5'- gGCCGAGGCCaccccguggucagcGAUCcuugaGCCGCuCGguuggacccCCGCa -3' miRNA: 3'- -CGGCUCCGG--------------CUAGag---CGGUG-GC---------GGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 30158 | 0.66 | 0.464137 |
Target: 5'- aCCG-GGCCGccuacaggC-CGCCACaGCCGCc -3' miRNA: 3'- cGGCuCCGGCua------GaGCGGUGgCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 14371 | 0.66 | 0.502281 |
Target: 5'- uGUCuccGCUGAUCUCGUCACCGagcuCGCc -3' miRNA: 3'- -CGGcucCGGCUAGAGCGGUGGCg---GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 14668 | 0.66 | 0.491649 |
Target: 5'- cCCGAcucgGGCCGcGUgcacucgauucugCUCGaCCcCCGCCGCg -3' miRNA: 3'- cGGCU----CCGGC-UA-------------GAGC-GGuGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 15344 | 0.67 | 0.436546 |
Target: 5'- --aGGGGCCaagcugguccaGuAUCUCGCCgaucugggcgaGCUGCCGCa -3' miRNA: 3'- cggCUCCGG-----------C-UAGAGCGG-----------UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 60531 | 0.67 | 0.418686 |
Target: 5'- gGCCG-GGCCGGga-CGCaGCCGCuCGUc -3' miRNA: 3'- -CGGCuCCGGCUagaGCGgUGGCG-GCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 44273 | 0.67 | 0.427561 |
Target: 5'- aUCGAGGCCGAacgcCUUgGCCAgCGCgaGCg -3' miRNA: 3'- cGGCUCCGGCUa---GAG-CGGUgGCGg-CG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 28640 | 0.67 | 0.418686 |
Target: 5'- aCCGGuGCCGAcacCGCCgagGCCGCCGUc -3' miRNA: 3'- cGGCUcCGGCUagaGCGG---UGGCGGCG- -5' |
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23220 | 5' | -61.6 | NC_005259.1 | + | 19871 | 0.67 | 0.418686 |
Target: 5'- cGCCc--GCCGGgaUCGCCGaCGCCGCg -3' miRNA: 3'- -CGGcucCGGCUagAGCGGUgGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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